C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00046Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000010207-ENSDARG00000041170 CGP 7955 18:19553585-19600523
GeneTranscriptPositionBiotype
ENSDARG00000010207 (smad3b)
MAD, mothers against decapentaplegic homolog 3b (Drosophila) 		ENSDART00000043455 (smad3b-001) 19553585-19586920 protein_coding
ENSDARG00000041170 (aagab)
alpha- and gamma-adaptin binding protein 		ENSDART00000060344 (aagab-001) 19593319-19600523 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00046Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166949-ENSG00000103591 CGP 9606 15:67063763-67255195
GeneTranscriptPositionBiotype
ENSG00000103591 (AAGAB)
alpha- and gamma-adaptin binding protein 		ENST00000261880 (AAGAB-001) 67201033-67254736 protein_coding
ENST00000538028 (AAGAB-004) 67201673-67221202 processed_transcript
ENST00000542650 (AAGAB-002) 67202740-67255195 protein_coding
ENST00000558725 (AAGAB-006) 67226699-67254654 processed_transcript
ENST00000560362 (AAGAB-005) 67231848-67242871 protein_coding
ENST00000561229 (AAGAB-007) 67236718-67254654 processed_transcript
ENST00000561452 (AAGAB-003) 67201707-67254675 protein_coding
ENSG00000103599 (IQCH)
IQ motif containing H 		ENST00000335894 (IQCH-002) 67254831-67501804 protein_coding
ENST00000358767 (IQCH-201) 67254800-67501803 protein_coding
ENST00000512104 (IQCH-003) 67254800-67307224 protein_coding
ENST00000514049 (IQCH-001) 67254801-67501804 nonsense_mediated_decay
ENST00000535744 (IQCH-004) 67254848-67372170 nonsense_mediated_decay
ENST00000546225 (IQCH-202) 67254800-67501803 protein_coding
ENST00000558759 (IQCH-011) 67490015-67502260 protein_coding
ENST00000559172 (IQCH-008) 67357345-67360095 retained_intron
ENST00000559568 (IQCH-005) 67254848-67374168 nonsense_mediated_decay
ENST00000560497 (IQCH-009) 67255037-67279451 processed_transcript
ENST00000560790 (IQCH-007) 67279482-67282240 processed_transcript
ENST00000561339 (IQCH-010) 67261302-67372444 nonsense_mediated_decay
ENST00000561357 (IQCH-006) 67372520-67400226 protein_coding
ENSG00000166949 (SMAD3)
SMAD family member 3 		ENST00000327367 (SMAD3-001) 67065845-67195195 protein_coding
ENST00000439724 (SMAD3-003) 67138001-67190894 protein_coding
ENST00000537194 (SMAD3-004) 67166019-67190762 protein_coding
ENST00000540846 (SMAD3-002) 67125716-67190762 protein_coding
ENST00000558428 (SMAD3-009) 67166531-67181420 protein_coding
ENST00000558739 (SMAD3-014) 67138235-67165356 protein_coding
ENST00000558763 (SMAD3-006) 67186662-67191521 retained_intron
ENST00000558827 (SMAD3-008) 67166531-67184778 protein_coding
ENST00000558894 (SMAD3-013) 67128103-67187447 protein_coding
ENST00000559092 (SMAD3-015) 67098582-67165035 protein_coding
ENST00000559460 (SMAD3-012) 67063763-67166838 protein_coding
ENST00000559937 (SMAD3-010) 67077986-67170675 retained_intron
ENST00000560175 (SMAD3-016) 67098679-67170604 protein_coding
ENST00000560402 (SMAD3-011) 67174303-67193180 retained_intron
ENST00000560424 (SMAD3-007) 67184775-67190841 protein_coding
ENSG00000242634 (RPS24P16)
ribosomal protein S24 pseudogene 16 		ENST00000497294 (RPS24P16-001) 67232446-67232837 processed_pseudogene
ENSG00000259202 (RP11-342M21.2)
 ENST00000558463 (RP11-342M21.2-001) 67142734-67146939 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00046Z_0001ENSDARG00000010207ENSDART00000043455ENSDARG00000041170ENSDART00000060344CIL_00046Z_0002ENSG00000103591ENST00000261880ENST00000538028ENST00000542650ENST00000558725ENST00000560362ENST00000561229ENST00000561452ENSG00000103599ENST00000335894ENST00000358767ENST00000512104ENST00000514049ENST00000535744ENST00000546225ENST00000558759ENST00000559172ENST00000559568ENST00000560497ENST00000560790ENST00000561339ENST00000561357ENSG00000166949ENST00000327367ENST00000439724ENST00000537194ENST00000540846ENST00000558428ENST00000558739ENST00000558763ENST00000558827ENST00000558894ENST00000559092ENST00000559460ENST00000559937ENST00000560175ENST00000560402ENST00000560424ENSG00000242634ENST00000497294ENSG00000259202ENST00000558463
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00046Z_0001ENSDARG00000010207ENSDART00000043455ENSDARG00000041170ENSDART00000060344CIL_00046Z_0002ENSG00000103591ENST00000261880ENST00000538028ENST00000542650ENST00000561452ENSG00000103599ENST00000335894ENSG00000166949ENST00000327367ENST00000439724ENSG00000242634ENST00000497294ENSG00000259202ENST00000558463
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010207 ENSDART00000043455 N/A N/A N/A 3.956±1.45 N/A N/A 4.299±3.89 1.344±0.00 0.343±0.00 N/A 10.832±0.00 N/A N/A N/A
ENSDARG00000041170 ENSDART00000060344 N/A N/A N/A 8.773±1.30 N/A N/A 7.732±0.75 2.332±3.00 0.720±0.00 N/A 4.310±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000103591 ENST00000261880 1.572±0.00 N/A 2.544±0.00 5.961±0.59 N/A 2.974±0.00 1.400±0.00 3.253±2.32 1.978±0.46 4.185±0.00 N/A 9.621±4.15 4.997±1.92 13.700±5.99
ENST00000538028 N/A 3.390±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542650 N/A N/A 3.831±0.00 7.525±0.00 8.555±0.00 N/A 2.110±0.00 2.566±0.00 3.533±0.00 4.135±0.00 4.029±0.00 9.847±0.00 N/A N/A
ENST00000558725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561452 6.089±0.00 6.825±0.00 N/A 9.173±0.00 8.235±0.00 4.918±1.26 4.048±0.00 12.676±0.00 4.554±0.00 6.461±4.99 8.887±0.00 10.119±2.90 7.951±0.46 11.250±1.08
ENSG00000103599 ENST00000335894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.034±0.77
ENST00000358767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166949 ENST00000327367 14.384±0.00 7.527±0.00 2.526±0.00 2.352±0.86 4.456±3.42 4.570±3.40 1.749±0.76 3.454±1.73 2.368±0.92 6.815±5.60 5.972±1.49 8.354±3.92 6.992±0.78 2.849±1.23
ENST00000439724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.159±0.00 N/A 4.341±1.08 N/A
ENST00000537194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242634 ENST00000497294 N/A 0.164±0.00 1.408±0.00 0.032±0.00 N/A N/A N/A 0.065±0.00 N/A N/A 0.057±0.00 0.059±0.02 0.045±0.00 N/A
ENSG00000259202 ENST00000558463 N/A 0.266±0.00 0.895±0.00 N/A N/A 0.436±0.00 N/A 2.014±0.00 N/A N/A N/A 0.103±0.00 N/A 0.257±0.05

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