C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472300 RP11-16F15.2-001 ENSG00000239470 9606 + 11:9660438-9660920 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000472300
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000472300 0.141±0.00 0.557±0.00 0.119±0.00 0.205±0.11 0.136±0.00 0.056±0.00 0.235±0.00 0.027±0.00 0.055±0.00 0.479±0.00 0.267±0.28 0.469±0.20 0.206±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0001 VISTA 11:9311967-9915183
CIL_0004J5 CIL_0004J5_0001 CGP 11:9573681-9752991

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 560
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 560
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 560
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 544
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 538
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 532
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 527
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 521
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 516
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 510
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 505
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 431
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 375
ENSMUST00000034094 Gins3-201 protein_coding Mus_musculus 0 318
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000120458 Gm7071-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 0 196
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 9.80909e-45 183
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 2e-22 110

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