C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475608 RP11-16F15.1-001 ENSG00000243964 9606 + 11:9606142-9606609 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000475608
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000475608 0.215±0.00 0.502±0.00 0.088±0.01 0.436±0.00 0.295±0.00 0.035±0.00 0.118±0.00 0.035±0.00 0.153±0.00 0.269±0.00 0.245±0.15 0.158±0.00 0.102±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0001 VISTA 11:9311967-9915183
CIL_0004J5 CIL_0004J5_0001 CGP 11:9573681-9752991

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 545
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 545
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 532
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 521
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 508
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000105085 Gm10923-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000178439 Gm21959-201 processed_pseudogene Mus_musculus 0 399
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000105172 Gm6096-201 protein_coding Mus_musculus 0 366
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 298

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