C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004L0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000087299-ENSDARG00000038489 CGP 7955 22:39432101-39543702
GeneTranscriptPositionBiotype
ENSDARG00000038489 (b3gnt7)
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 		ENSDART00000056169 (b3gnt7-001) 39538939-39543702 protein_coding
ENSDART00000134031 (b3gnt7-002) 39538921-39541849 protein_coding
ENSDARG00000087299 (armc9)
armadillo repeat containing 9 		ENSDART00000125991 (armc9-201) 39432101-39517904 protein_coding
ENSDART00000132181 (armc9-001) 39467181-39518291 protein_coding
ENSDART00000139112 (armc9-002) 39482409-39497655 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0004L0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135931-ENSG00000156966 CGP 9606 2:231198546-231401164
GeneTranscriptPositionBiotype
ENSG00000135931 (ARMC9)
armadillo repeat containing 9 		ENST00000349938 (ARMC9-001) 231198546-231345202 protein_coding
ENST00000424740 (ARMC9-011) 231258969-231276775 protein_coding
ENST00000428662 (ARMC9-014) 231270981-231345202 nonsense_mediated_decay
ENST00000436339 (ARMC9-009) 231235352-231276776 protein_coding
ENST00000440107 (ARMC9-007) 231198753-231216788 protein_coding
ENST00000444285 (ARMC9-015) 231235340-231240157 protein_coding
ENST00000446447 (ARMC9-012) 231270532-231278456 protein_coding
ENST00000467698 (ARMC9-010) 231258965-231278427 retained_intron
ENST00000469789 (ARMC9-008) 231214934-231235354 processed_transcript
ENST00000481520 (ARMC9-013) 231270743-231291435 retained_intron
ENST00000482392 (ARMC9-006) 231198643-231215280 retained_intron
ENST00000486787 (ARMC9-004) 231293820-231345202 retained_intron
ENST00000488821 (ARMC9-005) 231370574-231372219 processed_transcript
ENST00000611582 (ARMC9-003) 231206239-231374837 protein_coding
ENST00000614261 (ARMC9-201) 231198580-231373895 protein_coding
ENSG00000156966 (B3GNT7)
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 		ENST00000287590 (B3GNT7-001) 231395543-231401164 protein_coding
ENST00000479618 (B3GNT7-003) 231397176-231398257 processed_transcript
ENSG00000224376 (AC017104.6)
 ENST00000415129 (AC017104.6-001) 231388976-231394984 lincRNA
ENST00000418050 (AC017104.6-003) 231393679-231394991 retained_intron
ENST00000454416 (AC017104.6-002) 231393782-231394991 lincRNA
ENSG00000237039 (AC018738.2)
 ENST00000441378 (AC018738.2-001) 231256097-231256306 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004L0_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000062590-ENSMUSG00000079445 CGP 10090 1:86154780-86307305
GeneTranscriptPositionBiotype
ENSMUSG00000062590 (Armc9)
armadillo repeat containing 9 		ENSMUST00000027434 (Armc9-002) 86154810-86278284 protein_coding
ENSMUST00000113309 (Armc9-001) 86154798-86276697 protein_coding
ENSMUST00000123618 (Armc9-003) 86154780-86246326 retained_intron
ENSMUST00000126579 (Armc9-012) 86244566-86269086 nonsense_mediated_decay
ENSMUST00000131412 (Armc9-008) 86154815-86252489 protein_coding
ENSMUST00000134858 (Armc9-007) 86154798-86179850 processed_transcript
ENSMUST00000135973 (Armc9-005) 86154784-86259827 retained_intron
ENSMUST00000150059 (Armc9-011) 86196390-86252392 protein_coding
ENSMUST00000153389 (Armc9-006) 86154786-86170331 retained_intron
ENSMUST00000153653 (Armc9-009) 86154819-86177701 retained_intron
ENSMUST00000155168 (Armc9-004) 86154784-86213667 retained_intron
ENSMUST00000156675 (Armc9-010) 86202496-86252489 protein_coding
ENSMUST00000186509 (Armc9-013) 86154799-86164837 protein_coding
ENSMUSG00000079445 (B3gnt7)
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 		ENSMUST00000113306 (B3gnt7-001) 86303234-86307305 protein_coding
ENSMUST00000188695 (B3gnt7-003) 86303531-86305849 protein_coding
ENSMUST00000189618 (B3gnt7-002) 86302832-86304707 retained_intron
ENSMUSG00000087538 (Gm16341)
predicted gene 16341 		ENSMUST00000126385 (Gm16341-001) 86275509-86301375 antisense
ENSMUSG00000094638 (Gm21972)
predicted gene 21972 		ENSMUST00000135197 (Gm21972-001) 86133637-86162788 nonsense_mediated_decay
ENSMUSG00000099644 (RP23-299F18.1)
predicted gene 28626 		ENSMUST00000187004 (RP23-299F18.1-001) 86303195-86304059 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004L0_0001ENSDARG00000038489ENSDART00000056169ENSDART00000134031ENSDARG00000087299ENSDART00000125991ENSDART00000132181ENSDART00000139112CIL_0004L0_0002ENSG00000135931ENST00000349938ENST00000424740ENST00000428662ENST00000436339ENST00000440107ENST00000444285ENST00000446447ENST00000467698ENST00000469789ENST00000481520ENST00000482392ENST00000486787ENST00000488821ENST00000611582ENST00000614261ENSG00000156966ENST00000287590ENST00000479618ENSG00000224376ENST00000415129ENST00000418050ENST00000454416ENSG00000237039ENST00000441378CIL_0004L0_0003ENSMUSG00000062590ENSMUST00000027434ENSMUST00000113309ENSMUST00000123618ENSMUST00000126579ENSMUST00000131412ENSMUST00000134858ENSMUST00000135973ENSMUST00000150059ENSMUST00000153389ENSMUST00000153653ENSMUST00000155168ENSMUST00000156675ENSMUST00000186509ENSMUSG00000079445ENSMUST00000113306ENSMUST00000188695ENSMUST00000189618ENSMUSG00000087538ENSMUST00000126385ENSMUSG00000094638ENSMUST00000135197ENSMUSG00000099644ENSMUST00000187004
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004L0_0001ENSDARG00000038489ENSDART00000056169ENSDARG00000087299ENSDART00000125991ENSDART00000132181ENSDART00000139112CIL_0004L0_0002ENSG00000135931ENST00000349938ENST00000428662ENST00000440107ENST00000482392ENST00000486787ENST00000611582ENST00000614261ENSG00000156966ENST00000287590ENSG00000224376ENST00000415129ENST00000418050ENST00000454416ENSG00000237039ENST00000441378CIL_0004L0_0003ENSMUSG00000062590ENSMUST00000027434ENSMUST00000113309ENSMUST00000131412ENSMUST00000135973ENSMUSG00000079445ENSMUST00000113306ENSMUST00000188695ENSMUST00000189618ENSMUSG00000087538ENSMUST00000126385ENSMUSG00000094638ENSMUST00000135197ENSMUSG00000099644ENSMUST00000187004
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038489 ENSDART00000056169 N/A N/A N/A 1.584±0.34 N/A N/A 1.344±0.36 1.161±0.04 0.069±0.00 N/A 0.602±0.00 N/A N/A N/A
ENSDART00000134031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000087299 ENSDART00000125991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.306±0.00 N/A N/A N/A
ENSDART00000132181 N/A N/A N/A 0.777±0.76 N/A N/A 0.827±0.17 0.705±0.00 0.110±0.00 N/A 0.772±0.00 N/A N/A N/A
ENSDART00000139112 N/A N/A N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135931 ENST00000349938 N/A 0.860±0.00 N/A 1.731±0.23 N/A 1.652±0.31 0.110±0.00 0.681±0.00 1.479±1.41 1.633±0.00 0.069±0.00 4.043±0.00 1.349±0.08 4.009±0.00
ENST00000424740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428662 0.527±0.00 N/A N/A 2.371±0.00 0.886±0.00 2.685±0.00 N/A N/A N/A 1.879±0.63 0.095±0.00 N/A N/A N/A
ENST00000436339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440107 0.589±0.00 N/A N/A 3.391±0.00 11.811±0.00 N/A 0.276±0.00 0.033±0.00 4.275±4.11 N/A N/A 6.466±0.00 N/A N/A
ENST00000444285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482392 N/A N/A N/A 3.563±0.00 N/A N/A 0.543±0.00 0.033±0.00 N/A 3.912±0.00 0.611±0.00 N/A N/A N/A
ENST00000486787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.559±0.00 N/A N/A
ENST00000488821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611582 N/A N/A N/A N/A 0.720±0.00 0.737±0.52 N/A 0.008±0.00 0.040±0.00 0.239±0.00 N/A 0.577±0.11 0.334±0.00 1.436±0.44
ENST00000614261 0.087±0.00 0.477±0.00 N/A 0.446±0.00 N/A N/A 0.025±0.00 0.503±0.00 0.028±0.00 0.436±0.00 0.086±0.00 0.991±0.07 0.604±0.28 3.558±0.00
ENSG00000156966 ENST00000287590 0.661±0.00 1.907±0.00 0.092±0.00 3.083±0.00 1.619±0.09 3.636±0.00 1.700±0.00 1.224±0.00 0.398±0.00 8.905±8.27 0.024±0.00 8.057±4.93 13.517±6.06 2.244±1.51
ENST00000479618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224376 ENST00000415129 0.029±0.00 N/A N/A N/A 0.099±0.00 N/A 0.141±0.00 N/A N/A 0.394±0.00 N/A N/A 0.077±0.00 0.241±0.00
ENST00000418050 0.031±0.00 0.262±0.00 N/A 0.364±0.00 0.114±0.01 0.178±0.00 0.019±0.00 0.135±0.00 0.044±0.00 0.277±0.06 N/A 0.309±0.02 0.296±0.09 0.587±0.08
ENST00000454416 N/A 1.303±0.00 0.676±0.00 N/A 0.326±0.00 0.696±0.00 N/A N/A N/A 1.392±0.00 N/A N/A 0.143±0.00 0.466±0.00
ENSG00000237039 ENST00000441378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.337±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000062590 ENSMUST00000027434 N/A N/A N/A N/A 1.802±0.00 2.131±0.23 N/A N/A N/A N/A N/A 2.490±0.06 N/A N/A
ENSMUST00000113309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.381±0.00
ENSMUST00000123618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.047±0.00 N/A 16.923±0.56
ENSMUST00000134858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135973 N/A 1.360±0.14 N/A N/A N/A N/A N/A 1.965±0.00 N/A N/A N/A 3.344±0.60 N/A N/A
ENSMUST00000150059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079445 ENSMUST00000113306 1.116±0.93 0.136±0.05 0.784±0.23 1.942±0.21 2.656±0.34 351.602±41.74 0.208±0.04 3.688±0.33 0.512±0.49 6.065±1.10 0.026±0.00 5.814±2.30 23.876±19.32 0.133±0.06
ENSMUST00000188695 N/A 0.061±0.00 N/A 0.099±0.00 N/A N/A N/A N/A 0.032±0.00 N/A 0.025±0.00 0.125±0.00 N/A 0.011±0.00
ENSMUST00000189618 N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087538 ENSMUST00000126385 N/A N/A 0.108±0.07 N/A 0.456±0.25 0.453±0.13 0.133±0.00 0.133±0.01 0.142±0.12 0.168±0.00 0.300±0.00 0.296±0.00 0.157±0.09 N/A
ENSMUSG00000094638 ENSMUST00000135197 N/A N/A N/A 69.022±0.00 N/A N/A N/A N/A N/A N/A N/A 58.602±0.00 72.045±23.30 N/A
ENSMUSG00000099644 ENSMUST00000187004 N/A 0.304±0.14 N/A 0.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00

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