C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455362 HMGB1P4-001 ENSG00000214821 9606 - 2:170601662-170602228 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyMuscleOvaryPlacentaTestisENST00000455362
Transcript ID Adipose Brain Breast Heart Kidney Muscle Ovary Placenta Testis
ENST00000455362 0.022±0.00 0.047±0.00 0.047±0.00 0.088±0.00 0.048±0.00 0.043±0.00 0.028±0.00 0.029±0.00 0.076±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SH CIL_0004SH_0001 CGP 2:169827458-170655171
CIL_0004SG CIL_0004SG_0001 CGP 2:170178145-170718078
CIL_0007J4 CIL_0007J4_0001 UCNEbase 2:170504394-170715328

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 652
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 647
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 647
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 647
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 641
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 630
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000176164 Gm3307-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000120637 Gm13121-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000120873 Gm13932-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 542
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000073196 Gm10075-201 pseudogene Mus_musculus 0 520
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000179328 Gm8807-201 processed_pseudogene Mus_musculus 0 472
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 455
ENSMUST00000182688 Gm7909-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000155086 Hmgb1-009 retained_intron Mus_musculus 0 340
ENSMUST00000168653 Gm3851-001 processed_pseudogene Mus_musculus 0 305

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