C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005B8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000018782-ENSDARG00000015374 CGP 7955 6:3087876-3212432
GeneTranscriptPositionBiotype
ENSDARG00000015374 (st3gal3a)
ST3 beta-galactoside alpha-2,3-sialyltransferase 3a 		ENSDART00000130879 (st3gal3a-001) 3141360-3212432 protein_coding
ENSDART00000132848 (st3gal3a-003) 3141647-3163450 protein_coding
ENSDART00000133707 (st3gal3a-004) 3141329-3182228 protein_coding
ENSDART00000134133 (st3gal3a-002) 3180602-3202607 protein_coding
CIL_0005B8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000066135-ENSG00000126091 CGP 9606 1:43650158-43931165
GeneTranscriptPositionBiotype
ENSG00000066135 (KDM4A)
lysine (K)-specific demethylase 4A 		ENST00000372396 (KDM4A-001) 43650158-43705515 protein_coding
ENST00000463151 (KDM4A-002) 43650536-43667021 processed_transcript
ENST00000472265 (KDM4A-005) 43666285-43667062 processed_transcript
ENST00000481296 (KDM4A-004) 43690590-43692278 processed_transcript
ENST00000485249 (KDM4A-003) 43653306-43667021 processed_transcript
ENSG00000126091 (ST3GAL3)
ST3 beta-galactoside alpha-2,3-sialyltransferase 3 		ENST00000262915 (ST3GAL3-201) 43707533-43931165 protein_coding
ENST00000330208 (ST3GAL3-202) 43707533-43931165 protein_coding
ENST00000332628 (ST3GAL3-033) 43736263-43930221 protein_coding
ENST00000335430 (ST3GAL3-203) 43707533-43931165 protein_coding
ENST00000347631 (ST3GAL3-006) 43707573-43930221 protein_coding
ENST00000351035 (ST3GAL3-204) 43707533-43931165 protein_coding
ENST00000353126 (ST3GAL3-205) 43707533-43931165 protein_coding
ENST00000361392 (ST3GAL3-001) 43707547-43931159 protein_coding
ENST00000361400 (ST3GAL3-002) 43707547-43931159 protein_coding
ENST00000361746 (ST3GAL3-004) 43736263-43930221 protein_coding
ENST00000361812 (ST3GAL3-007) 43736263-43930202 protein_coding
ENST00000372362 (ST3GAL3-012) 43736263-43930202 protein_coding
ENST00000372365 (ST3GAL3-009) 43736263-43930221 protein_coding
ENST00000372366 (ST3GAL3-008) 43736263-43930221 protein_coding
ENST00000372367 (ST3GAL3-005) 43736263-43930221 protein_coding
ENST00000372368 (ST3GAL3-010) 43736263-43930221 protein_coding
ENST00000372369 (ST3GAL3-003) 43736263-43930221 protein_coding
ENST00000372372 (ST3GAL3-011) 43736263-43930221 protein_coding
ENST00000372374 (ST3GAL3-206) 43707533-43931165 protein_coding
ENST00000461066 (ST3GAL3-035) 43707643-43838311 nonsense_mediated_decay
ENST00000461375 (ST3GAL3-022) 43792108-43920504 processed_transcript
ENST00000469715 (ST3GAL3-018) 43736263-43930221 nonsense_mediated_decay
ENST00000479383 (ST3GAL3-020) 43707558-43838251 nonsense_mediated_decay
ENST00000484868 (ST3GAL3-019) 43707640-43771999 processed_transcript
ENST00000489897 (ST3GAL3-016) 43707545-43930219 nonsense_mediated_decay
ENST00000490502 (ST3GAL3-024) 43899588-43930176 protein_coding
ENST00000490541 (ST3GAL3-013) 43736263-43930221 nonsense_mediated_decay
ENST00000495482 (ST3GAL3-023) 43920123-43930443 retained_intron
ENST00000528371 (ST3GAL3-025) 43736263-43930221 protein_coding
ENST00000530154 (ST3GAL3-032) 43707547-43920217 nonsense_mediated_decay
ENST00000530581 (ST3GAL3-031) 43736263-43930221 nonsense_mediated_decay
ENST00000531451 (ST3GAL3-017) 43736263-43930202 protein_coding
ENST00000531816 (ST3GAL3-034) 43736263-43930221 protein_coding
ENST00000531993 (ST3GAL3-026) 43736263-43930221 protein_coding
ENST00000532911 (ST3GAL3-021) 43705824-43838246 nonsense_mediated_decay
ENST00000533212 (ST3GAL3-030) 43736263-43930221 nonsense_mediated_decay
ENST00000533933 (ST3GAL3-027) 43736263-43930221 protein_coding
ENST00000533997 (ST3GAL3-028) 43736263-43930221 nonsense_mediated_decay
ENST00000545417 (ST3GAL3-207) 43707533-43931165 protein_coding
ENSG00000224751 (SHMT1P1)
serine hydroxymethyltransferase 1 (soluble) pseudogene 1 		ENST00000419974 (SHMT1P1-001) 43850300-43851611 processed_pseudogene
ENSG00000229444 (RP11-184I16.4)
 ENST00000437753 (RP11-184I16.4-001) 43709392-43727343 antisense
ENSG00000233674 (RP11-184I16.3)
 ENST00000427515 (RP11-184I16.3-001) 43743471-43743741 processed_pseudogene
ENSG00000252201 (RNU6-1058P)
RNA, U6 small nuclear 1058, pseudogene 		ENST00000516392 (RNU6-1058P-201) 43716467-43716556 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005B8_0001ENSDARG00000015374ENSDART00000130879ENSDART00000132848ENSDART00000133707ENSDART00000134133CIL_0005B8_0002ENSG00000066135ENST00000372396ENST00000463151ENST00000472265ENST00000481296ENST00000485249ENSG00000126091ENST00000262915ENST00000330208ENST00000332628ENST00000335430ENST00000347631ENST00000351035ENST00000353126ENST00000361392ENST00000361400ENST00000361746ENST00000361812ENST00000372362ENST00000372365ENST00000372366ENST00000372367ENST00000372368ENST00000372369ENST00000372372ENST00000372374ENST00000461066ENST00000461375ENST00000469715ENST00000479383ENST00000484868ENST00000489897ENST00000490502ENST00000490541ENST00000495482ENST00000528371ENST00000530154ENST00000530581ENST00000531451ENST00000531816ENST00000531993ENST00000532911ENST00000533212ENST00000533933ENST00000533997ENST00000545417ENSG00000224751ENST00000419974ENSG00000229444ENST00000437753ENSG00000233674ENST00000427515ENSG00000252201ENST00000516392
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005B8_0001ENSDARG00000015374ENSDART00000130879ENSDART00000133707CIL_0005B8_0002ENSG00000066135ENST00000372396ENST00000485249ENSG00000126091ENST00000262915ENST00000332628ENST00000351035ENST00000353126ENST00000361392ENST00000361400ENST00000361812ENST00000372362ENST00000372368ENST00000372374ENST00000461375ENST00000479383ENST00000489897ENST00000490502ENST00000495482ENST00000530154ENST00000531993ENST00000533212ENST00000533933ENST00000533997ENSG00000224751ENST00000419974ENSG00000229444ENST00000437753ENSG00000233674ENST00000427515ENSG00000252201ENST00000516392
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015374 ENSDART00000130879 N/A N/A N/A 2.502±0.89 N/A N/A 12.937±5.08 16.743±0.00 1.517±0.00 N/A 3.389±0.00 N/A N/A N/A
ENSDART00000132848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000133707 N/A N/A N/A 6.115±0.50 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000066135 ENST00000372396 4.764±0.00 3.761±0.00 N/A 3.513±2.08 3.838±2.41 2.269±0.38 2.184±1.61 4.718±1.95 1.267±0.36 2.756±0.15 2.541±1.16 4.923±3.91 6.946±1.33 2.066±0.90
ENST00000463151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485249 N/A N/A 2.568±0.00 N/A N/A N/A N/A N/A N/A N/A 2.016±0.00 4.298±0.00 N/A N/A
ENSG00000126091 ENST00000262915 0.848±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000330208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000332628 N/A N/A N/A N/A N/A N/A 0.617±0.00 N/A 2.665±0.00 N/A N/A N/A N/A N/A
ENST00000335430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000347631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000351035 N/A N/A N/A N/A N/A N/A N/A N/A 1.176±0.00 N/A N/A N/A N/A N/A
ENST00000353126 N/A N/A N/A N/A N/A 0.544±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000361392 3.587±0.00 4.436±0.00 N/A 4.073±0.00 3.708±0.00 5.925±0.00 6.699±0.00 2.321±0.00 1.787±0.00 N/A 16.501±14.82 8.251±1.29 4.876±1.92 N/A
ENST00000361400 N/A N/A N/A 6.308±0.00 4.487±0.00 1.938±0.00 1.635±0.00 2.089±0.00 1.108±0.00 1.405±0.00 N/A 2.041±1.01 N/A 4.545±0.00
ENST00000361746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000361812 N/A N/A N/A N/A N/A 0.904±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372362 N/A N/A N/A N/A N/A N/A 1.095±0.00 2.355±0.00 6.162±0.00 2.436±0.00 10.491±0.00 N/A N/A N/A
ENST00000372365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.853±0.00 N/A N/A N/A
ENST00000372369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372374 N/A N/A N/A N/A N/A N/A 0.180±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000461066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461375 N/A N/A N/A N/A N/A 0.403±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479383 N/A N/A 0.339±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489897 N/A N/A N/A N/A N/A N/A 0.582±0.00 N/A N/A N/A 3.278±0.00 2.132±0.00 N/A N/A
ENST00000490502 N/A N/A N/A N/A N/A N/A N/A 0.725±0.00 N/A N/A N/A N/A N/A N/A
ENST00000490541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.896±0.00 N/A N/A N/A
ENST00000528371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530154 N/A N/A N/A N/A N/A 0.115±0.00 N/A N/A N/A N/A N/A 0.411±0.00 N/A 5.765±0.00
ENST00000530581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.534±0.00 N/A N/A
ENST00000532911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533212 N/A N/A 1.054±0.00 N/A 1.397±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533933 N/A N/A N/A N/A 2.205±0.00 N/A N/A N/A N/A N/A N/A 0.584±0.00 7.604±0.00 N/A
ENST00000533997 N/A N/A 0.230±0.00 N/A N/A N/A N/A 0.890±0.00 N/A N/A N/A 2.256±0.00 N/A N/A
ENST00000545417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224751 ENST00000419974 N/A 0.098±0.00 0.083±0.00 0.067±0.05 0.143±0.13 0.095±0.00 N/A 0.043±0.00 0.039±0.00 0.299±0.00 N/A 0.141±0.16 N/A 0.051±0.04
ENSG00000229444 ENST00000437753 N/A 0.518±0.00 N/A 0.166±0.00 0.308±0.21 0.030±0.00 N/A 0.032±0.00 N/A 0.030±0.00 20.827±0.00 N/A N/A 0.562±0.33
ENSG00000233674 ENST00000427515 N/A N/A N/A 0.050±0.00 0.292±0.00 N/A 0.090±0.00 0.841±0.70 N/A N/A N/A 0.833±0.53 N/A 0.109±0.00
ENSG00000252201 ENST00000516392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.713±0.00

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