C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427515 RP11-184I16.3-001 ENSG00000233674 9606 + 1:43743471-43743741 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyOvaryTestisENST00000427515
Transcript ID Brain Breast Heart Kidney Ovary Testis
ENST00000427515 0.050±0.00 0.292±0.00 0.090±0.00 0.841±0.70 0.833±0.53 0.109±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005B8 CIL_0005B8_0002 CGP 1:43650158-43931165
CIL_0005B9 CIL_0005B9_0002 CGP 1:43705824-43937241
CIL_0009B8 CIL_0009B8_0001 VISTA 1:43734711-44337665

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153892 Sumo2-001 protein_coding Mus_musculus 0 281
ENSMUST00000117589 Sumo2-004 protein_coding Mus_musculus 0 281
ENSMUST00000121185 Sumo2-003 protein_coding Mus_musculus 0 281
ENSMUST00000021084 Sumo2-002 nonsense_mediated_decay Mus_musculus 0 267
ENSMUST00000119738 Gm12335-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000121569 Smt3h2-ps4-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000117664 Gm10241-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000117715 Gm11971-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000118989 Gm13690-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000121366 Gm13430-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000122297 Gm12755-001 unprocessed_pseudogene Mus_musculus 0 224
ENSMUST00000121084 Smt3h2-ps-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000140844 Sumo2-006 retained_intron Mus_musculus 0 217
ENSMUST00000117132 Gm9836-001 processed_pseudogene Mus_musculus 2e-35 152
ENSMUST00000050672 Sumo2-005 retained_intron Mus_musculus 2e-35 152
ENSMUST00000118155 Sumo2-007 protein_coding Mus_musculus 2e-35 152

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