C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005R1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131747-ENSG00000141753 CGP 9606 17:40388516-40457731
GeneTranscriptPositionBiotype
ENSG00000131747 (TOP2A)
topoisomerase (DNA) II alpha 170kDa 		ENST00000423485 (TOP2A-001) 40388516-40417950 protein_coding
ENST00000577541 (TOP2A-006) 40388526-40389602 protein_coding
ENST00000577706 (TOP2A-004) 40396383-40399261 retained_intron
ENST00000578412 (TOP2A-005) 40389562-40392101 retained_intron
ENST00000581055 (TOP2A-003) 40413480-40417705 protein_coding
ENSG00000141753 (IGFBP4)
insulin-like growth factor binding protein 4 		ENST00000269593 (IGFBP4-001) 40443461-40457731 protein_coding
ENSG00000222881 (Y_RNA)
Y RNA 		ENST00000410949 (Y_RNA.1-820) 40391232-40391338 misc_RNA
ENSG00000240125 (RP11-58O9.1)
 ENST00000491601 (RP11-58O9.1-001) 40439467-40439917 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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CIL_0005R1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020914-ENSMUSG00000017493 CGP 10090 11:98992943-99054392
GeneTranscriptPositionBiotype
ENSMUSG00000017493 (Igfbp4)
insulin-like growth factor binding protein 4 		ENSMUST00000017637 (Igfbp4-001) 99041244-99054392 protein_coding
ENSMUST00000123946 (Igfbp4-003) 99044766-99051815 processed_transcript
ENSMUST00000130530 (Igfbp4-004) 99043597-99051920 processed_transcript
ENSMUST00000140772 (Igfbp4-002) 99047311-99051812 protein_coding
ENSMUST00000177092 (Igfbp4-005) 99041760-99051701 protein_coding
ENSMUST00000177105 (Igfbp4-006) 99042186-99048360 processed_transcript
ENSMUSG00000020914 (Top2a)
topoisomerase (DNA) II alpha 		ENSMUST00000068031 (Top2a-001) 98992943-99024189 protein_coding
ENSMUST00000129777 (Top2a-003) 99022085-99024178 processed_transcript
ENSMUST00000139460 (Top2a-007) 98993467-98995370 processed_transcript
ENSMUST00000139730 (Top2a-002) 99016593-99022210 processed_transcript
ENSMUST00000144318 (Top2a-004) 99003625-99006522 processed_transcript
ENSMUST00000151997 (Top2a-005) 98999947-99001260 processed_transcript
ENSMUST00000154332 (Top2a-008) 98993071-98995724 processed_transcript
ENSMUSG00000077285 (Gm26394)
predicted gene, 26394 		ENSMUST00000104097 (Gm26394-201) 98999508-98999622 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005R1_0001ENSG00000131747ENST00000423485ENST00000577541ENST00000577706ENST00000578412ENST00000581055ENSG00000141753ENST00000269593ENSG00000222881ENST00000410949ENSG00000240125ENST00000491601CIL_0005R1_0002ENSMUSG00000017493ENSMUST00000017637ENSMUST00000123946ENSMUST00000130530ENSMUST00000140772ENSMUST00000177092ENSMUST00000177105ENSMUSG00000020914ENSMUST00000068031ENSMUST00000129777ENSMUST00000139460ENSMUST00000139730ENSMUST00000144318ENSMUST00000151997ENSMUST00000154332ENSMUSG00000077285ENSMUST00000104097
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005R1_0001ENSG00000131747ENST00000423485ENST00000577541ENST00000578412ENST00000581055ENSG00000141753ENST00000269593ENSG00000222881ENST00000410949ENSG00000240125ENST00000491601CIL_0005R1_0002ENSMUSG00000017493ENSMUST00000017637ENSMUST00000130530ENSMUST00000140772ENSMUST00000177092ENSMUSG00000020914ENSMUST00000068031ENSMUST00000139460ENSMUST00000144318ENSMUST00000154332ENSMUSG00000077285ENSMUST00000104097
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131747 ENST00000423485 N/A 0.315±0.00 0.030±0.00 0.022±0.01 2.890±0.00 2.967±2.79 0.227±0.00 0.088±0.00 N/A 1.105±0.00 N/A 13.719±12.54 10.563±10.58 18.287±6.74
ENST00000577541 N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 0.351±0.00 N/A N/A N/A N/A N/A
ENST00000577706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578412 N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581055 N/A N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000141753 ENST00000269593 1032.370±0.00 929.569±0.00 18.861±0.00 15.733±14.43 62.289±38.06 434.325±420.09 58.851±54.59 243.670±178.22 345.087±327.95 216.442±201.04 20.900±17.56 1237.813±1744.10 324.039±65.18 76.227±30.41
ENSG00000222881 ENST00000410949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.854±0.00 N/A 2.475±0.00
ENSG00000240125 ENST00000491601 0.069±0.00 0.150±0.00 N/A 0.075±0.00 N/A 0.212±0.00 N/A N/A 0.033±0.00 N/A 0.032±0.00 0.074±0.00 N/A 0.177±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017493 ENSMUST00000017637 160.674±49.56 26.242±8.39 65.402±0.31 11.203±4.78 80.045±36.43 23.390±3.68 19.406±2.55 150.387±32.61 240.638±223.33 58.379±5.84 3.172±3.22 79.902±75.22 20.759±20.42 1.042±0.58
ENSMUST00000123946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130530 338.460±84.60 N/A 69.399±12.15 25.858±1.16 138.819±16.58 70.946±6.24 41.679±4.56 195.574±18.06 277.786±272.22 93.041±28.90 8.155±3.19 118.187±23.89 38.449±14.60 3.268±0.25
ENSMUST00000140772 N/A N/A N/A N/A 89.599±1.49 65.543±0.00 N/A 200.662±21.98 N/A 64.399±0.56 N/A N/A N/A N/A
ENSMUST00000177092 N/A N/A N/A 32.540±0.00 N/A N/A N/A N/A N/A N/A N/A 170.235±0.00 29.957±1.20 N/A
ENSMUST00000177105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020914 ENSMUST00000068031 0.960±1.24 0.200±0.07 1.218±0.04 11.221±1.52 0.538±0.19 2.387±0.63 0.078±0.02 0.177±0.06 19.687±24.26 0.481±0.18 0.032±0.02 4.207±4.34 18.394±13.92 12.166±6.73
ENSMUST00000129777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139460 N/A N/A N/A N/A N/A N/A 0.138±0.03 N/A 0.117±0.02 N/A 0.159±0.00 1.992±0.00 N/A N/A
ENSMUST00000139730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144318 N/A N/A N/A N/A 0.884±0.12 1.883±0.07 N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A
ENSMUST00000151997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154332 N/A 0.517±0.11 N/A N/A N/A 3.245±0.00 N/A 0.515±0.19 0.298±0.11 N/A 0.091±0.00 2.375±0.88 N/A N/A
ENSMUSG00000077285 ENSMUST00000104097 N/A N/A N/A 12.446±0.00 N/A N/A N/A N/A 10.042±0.00 N/A N/A 37.927±0.00 N/A N/A

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