C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491601 RP11-58O9.1-001 ENSG00000240125 9606 - 17:40439467-40439917 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonLiverMuscleOvaryTestisENST00000491601
Transcript ID Adipose Adrenal Brain Colon Liver Muscle Ovary Testis
ENST00000491601 0.069±0.00 0.150±0.00 0.075±0.00 0.212±0.00 0.033±0.00 0.032±0.00 0.074±0.00 0.177±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005R1 CIL_0005R1_0001 CGP 17:40388516-40457731

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078729 Gm20900-201 processed_pseudogene Mus_musculus 0 466
ENSMUST00000102483 Rpl23a-001 protein_coding Mus_musculus 0 466
ENSMUST00000127270 Rpl23a-002 retained_intron Mus_musculus 0 466
ENSMUST00000104925 Rpl23a-ps3-201 protein_coding Mus_musculus 0 460
ENSMUST00000096020 Gm10335-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000099431 Gm10132-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000118777 Rpl23a-ps14-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000120313 Gm5384-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000148102 Gm3362-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000118798 Gm7312-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000180011 Gm8112-201 processed_pseudogene Mus_musculus 0 425
ENSMUST00000121605 Gm12322-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000119136 Gm8217-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000085589 Gm6177-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000085632 Rpl23a-ps1-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000178439 Gm21959-201 processed_pseudogene Mus_musculus 0 375
ENSMUST00000105087 Gm3940-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000121008 Rpl23a-ps4-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000187124 RP23-466F9.2-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000191583 Rpl23a-ps11-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000187732 RP23-349I9.17-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000188369 Rpl23a-ps9-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000161498 Gm16303-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000187984 RP23-349I9.11-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000185244 RP23-349I9.15-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000187903 RP23-349I9.24-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000187331 RP23-466F9.8-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000189660 RP23-466F9.10-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000186898 RP23-466F9.4-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000185511 Rpl23a-ps10-001 processed_pseudogene Mus_musculus 0 263

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