C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 14049
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121009 Gm14049-001 ENSMUSG00000083953 10090 + 2:130987984-130988619 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverPlacentaTestisENSMUST00000121009
Transcript ID Adipose Bladder Brain Breast Colon Liver Placenta Testis
ENSMUST00000121009 0.074±0.01 0.368±0.09 0.134±0.04 0.150±0.00 0.161±0.00 0.054±0.03 0.106±0.03 1.331±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032V CIL_00032V_0002 CGP 2:130706200-131030333
CIL_00067S CIL_00067S_0003 CGP 2:130906495-131043088

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 660
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 518
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 632
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 632
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 558
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 518
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 632
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 416
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 632
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 416
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 488
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 525
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 296
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 449
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 448
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 494
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 424
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 195
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 211
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 302
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 616
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 222
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 612
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 1.00053e-42 176
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 532

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