C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050442 Spo11-001 ENSMUSG00000005883 10090 + 2:172979849-172993576 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000050442
Transcript ID Testis
ENSMUST00000050442 1.425±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_0006IN CIL_0006IN_0003 CGP 2:172868012-172993576
CIL_0002XR CIL_0002XR_0002 CGP 2:172977700-173015739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0000781 IDA chromosome, telomeric region
GO:0001541 IMP ovarian follicle development
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0007129 IMP synapsis
GO:0007131 IMP reciprocal meiotic recombination
GO:0007141 IMP male meiosis I
GO:0007286 IMP spermatid development
GO:0016787 IEA hydrolase activity
GO:0034502 IMP protein localization to chromosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345868 SPO11-002 protein_coding Homo_sapiens 0.0000000000001 82
ENST00000371260 SPO11-003 protein_coding Homo_sapiens 0.0000000000001 82
ENST00000371263 SPO11-001 protein_coding Homo_sapiens 0 1018
ENST00000418127 SPO11-004 protein_coding Homo_sapiens 0 697

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