C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006KT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000176842-ENSG00000159387 CGP 9606 16:54930862-55330760
GeneTranscriptPositionBiotype
ENSG00000159387 (IRX6)
iroquois homeobox 6 		ENST00000290552 (IRX6-001) 55323760-55330760 protein_coding
ENST00000558315 (IRX6-002) 55325800-55327796 processed_transcript
ENSG00000176842 (IRX5)
iroquois homeobox 5 		ENST00000320990 (IRX5-002) 54931199-54934485 protein_coding
ENST00000394636 (IRX5-001) 54930862-54934485 protein_coding
ENST00000558597 (IRX5-004) 54932072-54934069 protein_coding
ENST00000560154 (IRX5-003) 54931199-54933960 protein_coding
ENST00000620085 (IRX5-201) 54931199-54933960 protein_coding
ENSG00000239555 (RN7SL841P)
RNA, 7SL, cytoplasmic 841, pseudogene 		ENST00000470547 (RN7SL841P-201) 55291379-55291675 misc_RNA
ENSG00000259283 (RP11-26L20.3)
 ENST00000558730 (RP11-26L20.3-001) 55259969-55333588 antisense
ENSG00000259711 (CTD-3032H12.2)
 ENST00000560487 (CTD-3032H12.2-001) 54934913-54954665 lincRNA
ENSG00000259725 (CTD-3032H12.1)
 ENST00000558156 (CTD-3032H12.1-002) 54938031-54938671 lincRNA
ENST00000559802 (CTD-3032H12.1-001) 54937786-54938671 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006KT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031737-ENSMUSG00000031738 CGP 10090 8:92357796-92680956
GeneTranscriptPositionBiotype
ENSMUSG00000031737 (Irx5)
Iroquois related homeobox 5 (Drosophila) 		ENSMUST00000034184 (Irx5-001) 92357796-92361456 protein_coding
ENSMUSG00000031738 (Irx6)
Iroquois related homeobox 6 (Drosophila) 		ENSMUST00000034185 (Irx6-001) 92674288-92680956 protein_coding
ENSMUST00000167261 (Irx6-002) 92674826-92680956 protein_coding
ENSMUSG00000100612 (RP24-69M8.4)
predicted gene 29177 		ENSMUST00000187016 (RP24-69M8.4-001) 92365189-92365621 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KT_0001ENSG00000159387ENST00000290552ENST00000558315ENSG00000176842ENST00000320990ENST00000394636ENST00000558597ENST00000560154ENST00000620085ENSG00000239555ENST00000470547ENSG00000259283ENST00000558730ENSG00000259711ENST00000560487ENSG00000259725ENST00000558156ENST00000559802CIL_0006KT_0002ENSMUSG00000031737ENSMUST00000034184ENSMUSG00000031738ENSMUST00000034185ENSMUST00000167261ENSMUSG00000100612ENSMUST00000187016
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KT_0001ENSG00000159387ENST00000290552ENST00000558315ENSG00000176842ENST00000320990ENST00000394636ENST00000558597ENST00000560154ENST00000620085ENSG00000239555ENST00000470547ENSG00000259283ENST00000558730ENSG00000259711ENST00000560487ENSG00000259725ENST00000558156ENST00000559802CIL_0006KT_0002ENSMUSG00000031737ENSMUST00000034184ENSMUSG00000031738ENSMUST00000034185ENSMUST00000167261ENSMUSG00000100612ENSMUST00000187016
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000159387 ENST00000290552 4.461±0.00 0.081±0.00 0.183±0.00 0.013±0.00 8.555±8.29 0.413±0.38 1.912±1.87 0.966±0.00 0.025±0.00 0.269±0.26 1.161±0.00 0.080±0.05 0.070±0.02 0.052±0.00
ENST00000558315 N/A N/A 0.233±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A
ENSG00000176842 ENST00000320990 N/A 0.122±0.00 N/A N/A 0.743±0.00 N/A N/A N/A 0.261±0.00 N/A N/A 0.173±0.00 N/A 0.263±0.00
ENST00000394636 0.441±0.00 0.186±0.00 0.612±0.00 0.053±0.00 0.448±0.01 N/A 1.679±0.13 1.499±0.00 N/A 0.779±0.00 0.808±0.46 0.201±0.00 N/A N/A
ENST00000558597 N/A N/A N/A N/A 1.273±0.00 N/A 1.091±0.00 0.836±0.00 N/A 0.744±0.00 1.170±0.00 0.836±0.91 0.218±0.17 2.687±0.00
ENST00000560154 N/A N/A N/A N/A 1.996±0.00 N/A 3.642±0.00 1.503±0.86 N/A N/A N/A 0.207±0.00 N/A N/A
ENST00000620085 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.711±0.00 N/A 0.270±0.00 N/A N/A
ENSG00000239555 ENST00000470547 N/A N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000259283 ENST00000558730 N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000259711 ENST00000560487 N/A N/A N/A N/A 0.279±0.00 N/A 0.097±0.00 0.167±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000259725 ENST00000558156 N/A N/A N/A N/A 0.748±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559802 0.132±0.00 N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031737 ENSMUST00000034184 0.069±0.03 2.745±0.75 0.098±0.02 6.357±4.63 5.493±2.43 0.021±0.01 2.367±0.60 2.027±0.44 0.035±0.02 15.318±2.20 0.221±0.20 4.019±0.91 0.192±0.14 4.143±1.58
ENSMUSG00000031738 ENSMUST00000034185 N/A N/A N/A 0.575±0.36 0.031±0.02 0.041±0.01 N/A N/A N/A N/A N/A N/A 0.010±0.00 0.046±0.00
ENSMUST00000167261 N/A N/A N/A 0.194±0.04 N/A 0.058±0.03 0.013±0.00 N/A 0.014±0.01 0.017±0.01 N/A N/A 0.002±0.00 0.067±0.01
ENSMUSG00000100612 ENSMUST00000187016 N/A N/A N/A 0.030±0.00 0.137±0.00 N/A N/A 0.128±0.01 N/A 0.460±0.23 N/A 0.237±0.00 N/A 0.118±0.00

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