C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000290552 IRX6-001 ENSG00000159387 9606 + 16:55323760-55330760 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290552
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290552 4.461±0.00 0.081±0.00 0.183±0.00 0.013±0.00 8.555±8.29 0.413±0.38 1.912±1.87 0.966±0.00 0.025±0.00 0.269±0.26 1.161±0.00 0.080±0.05 0.070±0.02 0.052±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_000986 CIL_000986_0001 VISTA 16:54740448-55341163
CIL_000989 CIL_000989_0001 VISTA 16:54745325-55346517
CIL_00098A CIL_00098A_0001 VISTA 16:54889273-55490371
CIL_000987 CIL_000987_0001 VISTA 16:54906681-55507962
CIL_0006KT CIL_0006KT_0001 CGP 16:54930862-55330760
CIL_0007WY CIL_0007WY_0001 VISTA 16:54995377-55596848
CIL_000988 CIL_000988_0001 VISTA 16:55084120-55684969
CIL_00098D CIL_00098D_0001 VISTA 16:55090504-55691826
CIL_0001GQ CIL_0001GQ_0001 CGP 16:55323760-55506691

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 0 1524
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 0 1042
ENSMUST00000175795 Irx3-001 protein_coding Mus_musculus 0 267
ENSMUST00000093312 Irx3-002 protein_coding Mus_musculus 0 267
ENSMUST00000034184 Irx5-001 protein_coding Mus_musculus 0 244
ENSMUST00000022095 Irx4-001 protein_coding Mus_musculus 0 241
ENSMUST00000176684 Irx4-002 protein_coding Mus_musculus 0 241
ENSDART00000042271 irx3b-001 protein_coding Danio_rerio 0 222
ENSDART00000148951 irx4a-002 retained_intron Danio_rerio 0 219
ENSDART00000051693 irx4a-001 protein_coding Danio_rerio 0 219
ENSDART00000044190 irx1a-002 protein_coding Danio_rerio 0 213
ENSDART00000006726 irx1a-001 protein_coding Danio_rerio 0 213
ENSDART00000036147 irx5b-001 protein_coding Danio_rerio 5.60519e-45 187
ENSDART00000148602 irx2a-002 retained_intron Danio_rerio 9.99967e-42 176
ENSDART00000016303 irx2a-001 protein_coding Danio_rerio 9.99967e-42 176
ENSDART00000130922 irx1b-201 protein_coding Danio_rerio 9e-38 163
ENSDART00000079114 irx1b-001 protein_coding Danio_rerio 9e-38 163

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