C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558597 IRX5-004 ENSG00000176842 9606 + 16:54932072-54934069 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLungMuscleOvaryPlacentaTestisENST00000558597
Transcript ID Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000558597 1.273±0.00 1.091±0.00 0.836±0.00 0.744±0.00 1.170±0.00 0.836±0.91 0.218±0.17 2.687±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0006IA CIL_0006IA_0001 CGP 16:54283304-54934485
CIL_0008ZG CIL_0008ZG_0001 VISTA 16:54331417-54933346
CIL_0008ZF CIL_0008ZF_0001 VISTA 16:54345555-54946447
CIL_0008ZB CIL_0008ZB_0001 VISTA 16:54450731-55051703
CIL_0008ZC CIL_0008ZC_0001 VISTA 16:54465190-55066248
CIL_000986 CIL_000986_0001 VISTA 16:54740448-55341163
CIL_000989 CIL_000989_0001 VISTA 16:54745325-55346517
CIL_00098A CIL_00098A_0001 VISTA 16:54889273-55490371
CIL_000987 CIL_000987_0001 VISTA 16:54906681-55507962
CIL_0006KT CIL_0006KT_0001 CGP 16:54930862-55330760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005499 IEA vitamin D binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007601 IEA visual perception
GO:0008406 IMP gonad development
GO:0043565 IEA sequence-specific DNA binding
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034184 Irx5-001 protein_coding Mus_musculus 0 1626
ENSDART00000043857 irx5a-001 protein_coding Danio_rerio 0 326
ENSDART00000036147 irx5b-001 protein_coding Danio_rerio 0 289
ENSMUST00000175795 Irx3-001 protein_coding Mus_musculus 0 272
ENSMUST00000093312 Irx3-002 protein_coding Mus_musculus 0 272
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 0 263
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 0 263
ENSMUST00000022095 Irx4-001 protein_coding Mus_musculus 0 200
ENSMUST00000176684 Irx4-002 protein_coding Mus_musculus 0 200
ENSDART00000042271 irx3b-001 protein_coding Danio_rerio 0 200
ENSDART00000148951 irx4a-002 retained_intron Danio_rerio 0 198
ENSDART00000051693 irx4a-001 protein_coding Danio_rerio 0 198
ENSDART00000148602 irx2a-002 retained_intron Danio_rerio 9.94922e-44 182
ENSDART00000016303 irx2a-001 protein_coding Danio_rerio 9.94922e-44 182
ENSDART00000044190 irx1a-002 protein_coding Danio_rerio 1.99965e-42 178
ENSDART00000006726 irx1a-001 protein_coding Danio_rerio 1.99965e-42 178
ENSDART00000130922 irx1b-201 protein_coding Danio_rerio 4e-39 167
ENSDART00000079114 irx1b-001 protein_coding Danio_rerio 4e-39 167
ENSDART00000113480 irx3a-202 protein_coding Danio_rerio 1e-38 165
ENSDART00000074895 irx3a-201 protein_coding Danio_rerio 1e-38 165

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