C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Iroquois related homeobox 6 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167261 Irx6-002 ENSMUSG00000031738 10090 + 8:92674826-92680956 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverLungPlacentaTestisENSMUST00000167261
Transcript ID Brain Colon Heart Liver Lung Placenta Testis
ENSMUST00000167261 0.194±0.04 0.058±0.03 0.013±0.00 0.014±0.01 0.017±0.01 0.002±0.00 0.067±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_000986 CIL_000986_0002 VISTA 8:92144893-92745556
CIL_000989 CIL_000989_0002 VISTA 8:92149353-92750411
CIL_00098A CIL_00098A_0002 VISTA 8:92245404-92846474
CIL_000987 CIL_000987_0002 VISTA 8:92255075-92855722
CIL_0007WY CIL_0007WY_0002 VISTA 8:92348089-92949598
CIL_0006KT CIL_0006KT_0002 CGP 8:92357796-92680956
CIL_000988 CIL_000988_0002 VISTA 8:92435258-93036114
CIL_00098D CIL_00098D_0002 VISTA 8:92442867-93044200
CIL_0001GQ CIL_0001GQ_0002 CGP 8:92674288-92853417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148951 irx4a-002 retained_intron Danio_rerio 0 233
ENSDART00000051693 irx4a-001 protein_coding Danio_rerio 0 233
ENSDART00000042271 irx3b-001 protein_coding Danio_rerio 0 215
ENSDART00000044190 irx1a-002 protein_coding Danio_rerio 0 213
ENSDART00000006726 irx1a-001 protein_coding Danio_rerio 0 213
ENSDART00000036147 irx5b-001 protein_coding Danio_rerio 0 202
ENSDART00000113480 irx3a-202 protein_coding Danio_rerio 1.4013e-45 189
ENSDART00000074895 irx3a-201 protein_coding Danio_rerio 1.4013e-45 189
ENSDART00000130922 irx1b-201 protein_coding Danio_rerio 2.00386e-43 182
ENSDART00000079114 irx1b-001 protein_coding Danio_rerio 2.00386e-43 182
ENSDART00000043857 irx5a-001 protein_coding Danio_rerio 9.99967e-42 176
ENSDART00000148602 irx2a-002 retained_intron Danio_rerio 4.00001e-41 174
ENSDART00000016303 irx2a-001 protein_coding Danio_rerio 4.00001e-41 174
ENST00000231357 IRX4-001 protein_coding Homo_sapiens 0 278
ENST00000290552 IRX6-001 protein_coding Homo_sapiens 0 1042
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 0 274
ENST00000302057 IRX2-002 protein_coding Homo_sapiens 0 265
ENST00000320990 IRX5-002 protein_coding Homo_sapiens 0 263
ENST00000329734 IRX3-001 protein_coding Homo_sapiens 0 309
ENST00000382611 IRX2-001 protein_coding Homo_sapiens 0 265
ENST00000394636 IRX5-001 protein_coding Homo_sapiens 0 263
ENST00000505790 IRX4-004 protein_coding Homo_sapiens 0 278
ENST00000505938 IRX4-006 processed_transcript Homo_sapiens 0 278
ENST00000508261 IRX4-002 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000511126 IRX4-005 protein_coding Homo_sapiens 3.00004e-41 172
ENST00000513692 IRX4-003 protein_coding Homo_sapiens 0 278
ENST00000558180 IRX3-002 retained_intron Homo_sapiens 0 309
ENST00000558315 IRX6-002 processed_transcript Homo_sapiens 0 344
ENST00000558597 IRX5-004 protein_coding Homo_sapiens 0 263
ENST00000613726 IRX4-201 protein_coding Homo_sapiens 0 272
ENST00000622814 IRX4-202 protein_coding Homo_sapiens 0 272

Loading