C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006R2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000151229-ENSG00000188906 CGP 9606 12:39755021-40369285
GeneTranscriptPositionBiotype
ENSG00000151229 (SLC2A13)
solute carrier family 2 (facilitated glucose transporter), member 13 		ENST00000280871 (SLC2A13-001) 39755021-40105859 protein_coding
ENST00000380858 (SLC2A13-002) 39949490-40106089 protein_coding
ENST00000465517 (SLC2A13-003) 39829408-39871881 retained_intron
ENST00000505338 (SLC2A13-004) 39830125-39835760 retained_intron
ENSG00000180116 (C12orf40)
chromosome 12 open reading frame 40 		ENST00000324616 (C12orf40-003) 39626183-39721914 protein_coding
ENST00000405531 (C12orf40-002) 39626167-39692187 protein_coding
ENST00000468200 (C12orf40-001) 39626218-39908300 nonsense_mediated_decay
ENSG00000188906 (LRRK2)
leucine-rich repeat kinase 2 		ENST00000298910 (LRRK2-004) 40225074-40369281 protein_coding
ENST00000343742 (LRRK2-002) 40225011-40304976 protein_coding
ENST00000416796 (LRRK2-001) 40196744-40283952 protein_coding
ENST00000430804 (LRRK2-005) 40295505-40369285 nonsense_mediated_decay
ENST00000474202 (LRRK2-006) 40225595-40232783 retained_intron
ENST00000479187 (LRRK2-003) 40298466-40369285 retained_intron
ENST00000481256 (LRRK2-007) 40312714-40320062 processed_transcript
ENSG00000223914 (AC079630.2)
 ENST00000417422 (AC079630.2-002) 40166252-40167707 lincRNA
ENST00000457989 (AC079630.2-001) 40156239-40167612 lincRNA
ENSG00000225342 (AC079630.4)
 ENST00000412812 (AC079630.4-001) 40186009-40223803 antisense
ENST00000618127 (AC079630.4-002) 40223076-40224915 antisense
ENSG00000229014 (RPL30P13)
ribosomal protein L30 pseudogene 13 		ENST00000418873 (RPL30P13-001) 40068243-40068590 processed_pseudogene
ENSG00000229899 (AC084290.2)
 ENST00000434995 (AC084290.2-001) 40286289-40286662 processed_pseudogene
ENSG00000260943 (RP11-476D10.1)
 ENST00000563933 (RP11-476D10.1-001) 40140926-40142876 lincRNA
CIL_0006R2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036298-ENSMUSG00000036273 CGP 10090 15:91267696-91816120
GeneTranscriptPositionBiotype
ENSMUSG00000036273 (Lrrk2)
leucine-rich repeat kinase 2 		ENSMUST00000060642 (Lrrk2-001) 91673175-91816120 protein_coding
ENSMUST00000133743 (Lrrk2-003) 91780378-91816026 processed_transcript
ENSMUST00000137657 (Lrrk2-004) 91808238-91816026 retained_intron
ENSMUST00000140734 (Lrrk2-002) 91738948-91789110 processed_transcript
ENSMUST00000156900 (Lrrk2-005) 91772345-91778491 processed_transcript
ENSMUST00000172797 (Lrrk2-006) 91814628-91816119 retained_intron
ENSMUSG00000036298 (Slc2a13)
solute carrier family 2 (facilitated glucose transporter), member 13 		ENSMUST00000109282 (Slc2a13-003) 91542225-91573194 processed_transcript
ENSMUST00000109283 (Slc2a13-001) 91267696-91573261 protein_coding
ENSMUST00000156971 (Slc2a13-004) 91396832-91412217 processed_transcript
ENSMUSG00000081771 (Gm15381)
predicted gene 15381 		ENSMUST00000121501 (Gm15381-001) 91556762-91557917 processed_pseudogene
ENSMUSG00000084240 (Gm15383)
predicted gene 15383 		ENSMUST00000121889 (Gm15383-001) 91530924-91532366 processed_pseudogene
ENSMUSG00000086160 (4933438A12Rik)
RIKEN cDNA 4933438A12 gene 		ENSMUST00000144579 (4933438A12Rik-001) 91597583-91604676 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006R2_0001ENSG00000151229ENST00000280871ENST00000380858ENST00000465517ENST00000505338ENSG00000180116ENST00000324616ENST00000405531ENST00000468200ENSG00000188906ENST00000298910ENST00000343742ENST00000416796ENST00000430804ENST00000474202ENST00000479187ENST00000481256ENSG00000223914ENST00000417422ENST00000457989ENSG00000225342ENST00000412812ENST00000618127ENSG00000229014ENST00000418873ENSG00000229899ENST00000434995ENSG00000260943ENST00000563933CIL_0006R2_0002ENSMUSG00000036273ENSMUST00000060642ENSMUST00000133743ENSMUST00000137657ENSMUST00000140734ENSMUST00000156900ENSMUST00000172797ENSMUSG00000036298ENSMUST00000109282ENSMUST00000109283ENSMUST00000156971ENSMUSG00000081771ENSMUST00000121501ENSMUSG00000084240ENSMUST00000121889ENSMUSG00000086160ENSMUST00000144579
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006R2_0001ENSG00000151229ENST00000280871ENST00000380858ENSG00000180116ENST00000324616ENSG00000188906ENST00000298910ENST00000343742ENST00000430804ENST00000479187ENSG00000223914ENST00000417422ENST00000457989ENSG00000225342ENST00000412812ENST00000618127ENSG00000229014ENST00000418873ENSG00000229899ENST00000434995ENSG00000260943ENST00000563933CIL_0006R2_0002ENSMUSG00000036273ENSMUST00000060642ENSMUST00000133743ENSMUST00000137657ENSMUST00000140734ENSMUST00000156900ENSMUSG00000036298ENSMUST00000109282ENSMUST00000109283ENSMUSG00000081771ENSMUST00000121501ENSMUSG00000084240ENSMUST00000121889ENSMUSG00000086160ENSMUST00000144579
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000151229 ENST00000280871 1.627±0.00 0.365±0.00 5.146±0.00 12.081±5.13 1.755±1.02 2.722±1.51 1.377±0.27 2.425±0.79 1.388±0.26 1.457±0.42 0.261±0.09 0.504±0.32 0.603±0.10 1.199±0.18
ENST00000380858 N/A N/A N/A N/A 1.391±0.00 1.414±0.00 N/A N/A 1.463±0.00 N/A N/A 0.194±0.15 N/A N/A
ENST00000465517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180116 ENST00000324616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.759±2.21
ENST00000405531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188906 ENST00000298910 0.658±0.00 0.486±0.00 4.126±0.00 1.037±0.04 0.943±0.45 1.249±0.00 0.525±0.04 2.255±0.00 0.910±0.00 8.679±4.88 0.717±0.00 0.487±0.07 0.184±0.00 0.603±0.00
ENST00000343742 N/A N/A 1.872±0.00 N/A N/A N/A 0.267±0.00 1.251±0.00 N/A 13.708±0.00 N/A N/A N/A N/A
ENST00000416796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430804 N/A N/A N/A N/A 0.583±0.00 0.725±0.46 0.262±0.00 2.321±0.00 0.296±0.00 1.877±0.00 0.338±0.02 0.421±0.39 0.091±0.02 0.355±0.00
ENST00000474202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479187 0.188±0.00 N/A 1.121±0.00 N/A N/A N/A 0.103±0.00 0.967±0.00 N/A 6.699±0.00 N/A 0.154±0.00 N/A 0.194±0.00
ENST00000481256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223914 ENST00000417422 N/A N/A 1.230±0.00 N/A N/A N/A N/A 0.261±0.00 N/A 0.462±0.00 N/A N/A N/A 0.058±0.00
ENST00000457989 N/A N/A N/A N/A N/A N/A N/A 0.363±0.00 N/A 0.469±0.00 N/A N/A N/A N/A
ENSG00000225342 ENST00000412812 0.171±0.00 0.537±0.00 N/A 0.171±0.00 0.262±0.00 0.125±0.00 0.255±0.00 N/A 0.055±0.00 N/A N/A N/A N/A 0.122±0.00
ENST00000618127 0.315±0.00 0.459±0.00 0.722±0.00 0.597±0.21 0.242±0.17 0.109±0.00 0.135±0.01 1.143±1.06 0.067±0.05 2.908±0.00 0.161±0.00 0.319±0.16 0.080±0.05 0.160±0.01
ENSG00000229014 ENST00000418873 N/A 0.037±0.00 N/A N/A N/A N/A 0.033±0.00 N/A N/A 0.132±0.00 0.032±0.00 N/A N/A 0.067±0.00
ENSG00000229899 ENST00000434995 N/A N/A 0.736±0.00 N/A N/A N/A N/A 0.231±0.00 N/A 5.021±0.00 N/A N/A N/A N/A
ENSG00000260943 ENST00000563933 0.009±0.00 N/A N/A N/A N/A N/A N/A 0.029±0.00 0.025±0.00 1.087±0.31 N/A N/A 0.021±0.00 0.033±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036273 ENSMUST00000060642 1.144±0.75 2.597±1.53 2.010±0.22 1.357±1.60 1.743±0.44 0.434±0.17 1.323±0.19 7.598±2.13 0.340±0.30 3.900±1.61 0.556±0.18 1.647±1.28 0.432±0.21 0.509±0.09
ENSMUST00000133743 N/A N/A N/A 2.214±0.00 N/A N/A N/A N/A 0.230±0.02 N/A N/A N/A 0.329±0.00 2.566±0.46
ENSMUST00000137657 N/A N/A N/A 0.148±0.01 1.219±0.34 0.582±0.06 N/A N/A 0.276±0.12 2.973±0.09 N/A 0.891±0.27 N/A 0.381±0.00
ENSMUST00000140734 N/A N/A N/A N/A N/A 0.417±0.00 N/A N/A 0.102±0.03 N/A N/A 0.640±0.00 0.375±0.00 N/A
ENSMUST00000156900 N/A N/A N/A 22.249±0.00 N/A N/A N/A N/A N/A N/A N/A 16.294±0.00 2.367±0.00 10.420±0.00
ENSMUST00000172797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036298 ENSMUST00000109282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A
ENSMUST00000109283 2.993±1.12 0.252±0.08 1.372±0.05 3.172±1.80 1.378±0.44 2.435±0.44 0.210±0.06 0.977±0.12 0.124±0.04 1.246±0.24 0.070±0.02 0.610±0.21 0.203±0.14 0.077±0.06
ENSMUST00000156971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081771 ENSMUST00000121501 0.193±0.00 N/A 0.006±0.00 0.062±0.01 0.202±0.08 0.172±0.00 0.083±0.00 N/A 0.008±0.00 0.098±0.00 N/A 0.021±0.00 0.005±0.00 N/A
ENSMUSG00000084240 ENSMUST00000121889 0.046±0.04 N/A 0.031±0.02 0.080±0.01 0.050±0.01 0.071±0.03 N/A 0.039±0.01 0.008±0.00 0.043±0.02 N/A 0.107±0.00 0.003±0.00 0.038±0.02
ENSMUSG00000086160 ENSMUST00000144579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 0.006±0.00 0.776±0.14

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