C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422644 HNRNPA1P25-001 ENSG00000231206 9606 - X:74473017-74473953 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverMuscleOvaryPlacentaENST00000422644
Transcript ID Adipose Brain Breast Colon Liver Muscle Ovary Placenta
ENST00000422644 0.078±0.00 0.041±0.00 0.080±0.00 0.012±0.00 0.040±0.00 0.024±0.00 0.028±0.00 0.063±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S1 CIL_0006S1_0001 CGP X:74304190-74533917
CIL_0006S9 CIL_0006S9_0001 CGP X:74421461-74614617

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 905
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 905
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 885
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 861
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 824
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 822
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 686
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 686
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 606
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 296

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