C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006TN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122741-ENSG00000122696 CGP 9606 9:37800502-37904353
GeneTranscriptPositionBiotype
ENSG00000107371 (EXOSC3)
exosome component 3 		ENST00000327304 (EXOSC3-001) 37779714-37785057 protein_coding
ENST00000396521 (EXOSC3-002) 37780607-37785064 protein_coding
ENST00000465229 (EXOSC3-005) 37766978-37785061 nonsense_mediated_decay
ENST00000465860 (EXOSC3-007) 37781804-37784745 retained_intron
ENST00000482614 (EXOSC3-008) 37780806-37801437 processed_transcript
ENST00000489414 (EXOSC3-009) 37780691-37800709 processed_transcript
ENST00000490516 (EXOSC3-004) 37780588-37784713 processed_transcript
ENST00000496910 (EXOSC3-006) 37783872-37784745 retained_intron
ENSG00000122741 (DCAF10)
DDB1 and CUL4 associated factor 10 		ENST00000242323 (DCAF10-201) 37800554-37867666 protein_coding
ENST00000377724 (DCAF10-001) 37800502-37863325 protein_coding
ENST00000461549 (DCAF10-003) 37819294-37860441 processed_transcript
ENST00000478453 (DCAF10-004) 37858480-37861441 processed_transcript
ENST00000483167 (DCAF10-002) 37854819-37863325 processed_transcript
ENSG00000213839 (TMX2P1)
thioredoxin-related transmembrane protein 2 pseudogene 1 		ENST00000436507 (TMX2P1-001) 37885683-37886390 processed_pseudogene
ENSG00000232454 (RP11-3J10.7)
 ENST00000452964 (RP11-3J10.7-001) 37836044-37836394 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0006TN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035572-ENSMUSG00000045973 CGP 10090 4:45342101-45408766
GeneTranscriptPositionBiotype
ENSMUSG00000028322 (Exosc3)
exosome component 3 		ENSMUST00000030003 (Exosc3-001) 45316613-45320629 protein_coding
ENSMUST00000130843 (Exosc3-002) 45317489-45320604 processed_transcript
ENSMUST00000143111 (Exosc3-003) 45316794-45320336 processed_transcript
ENSMUST00000152056 (Exosc3-004) 45316954-45342732 protein_coding
ENSMUSG00000035572 (Dcaf10)
DDB1 and CUL4 associated factor 10 		ENSMUST00000107798 (Dcaf10-002) 45342182-45374956 processed_transcript
ENSMUST00000130821 (Dcaf10-004) 45342120-45370479 processed_transcript
ENSMUST00000153803 (Dcaf10-003) 45370346-45375667 protein_coding
ENSMUST00000155551 (Dcaf10-001) 45342101-45379759 protein_coding
ENSMUSG00000045973 (Slc25a51)
solute carrier family 25, member 51 		ENSMUST00000107796 (Slc25a51-001) 45395923-45408761 protein_coding
ENSMUST00000116341 (Slc25a51-201) 45395923-45408766 protein_coding
ENSMUST00000132815 (Slc25a51-003) 45399241-45408760 protein_coding
ENSMUST00000134714 (Slc25a51-002) 45407172-45408735 processed_transcript
ENSMUST00000151516 (Slc25a51-005) 45399602-45404866 protein_coding
ENSMUST00000153904 (Slc25a51-004) 45399572-45408646 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TN_0001ENSG00000107371ENST00000327304ENST00000396521ENST00000465229ENST00000465860ENST00000482614ENST00000489414ENST00000490516ENST00000496910ENSG00000122741ENST00000242323ENST00000377724ENST00000461549ENST00000478453ENST00000483167ENSG00000213839ENST00000436507ENSG00000232454ENST00000452964CIL_0006TN_0002ENSMUSG00000028322ENSMUST00000030003ENSMUST00000130843ENSMUST00000143111ENSMUST00000152056ENSMUSG00000035572ENSMUST00000107798ENSMUST00000130821ENSMUST00000153803ENSMUST00000155551ENSMUSG00000045973ENSMUST00000107796ENSMUST00000116341ENSMUST00000132815ENSMUST00000134714ENSMUST00000151516ENSMUST00000153904
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TN_0001ENSG00000107371ENST00000327304ENST00000396521ENST00000489414ENSG00000122741ENST00000242323ENST00000377724ENSG00000213839ENST00000436507ENSG00000232454ENST00000452964CIL_0006TN_0002ENSMUSG00000028322ENSMUST00000030003ENSMUST00000130843ENSMUST00000143111ENSMUST00000152056ENSMUSG00000035572ENSMUST00000107798ENSMUST00000130821ENSMUST00000153803ENSMUST00000155551ENSMUSG00000045973ENSMUST00000107796ENSMUST00000116341ENSMUST00000132815ENSMUST00000151516
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107371 ENST00000327304 N/A N/A N/A N/A N/A N/A 1.945±0.00 N/A 6.947±0.00 5.745±0.00 N/A 6.932±0.00 N/A N/A
ENST00000396521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.867±0.00 29.506±0.00 57.744±0.00
ENST00000465229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.614±0.00 N/A N/A
ENST00000490516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000122741 ENST00000242323 4.256±0.00 4.228±0.00 N/A 2.225±0.60 3.672±0.24 4.831±0.00 0.699±0.00 4.698±2.50 2.974±0.00 1.583±0.32 1.602±0.93 3.368±0.91 2.427±0.65 4.884±0.00
ENST00000377724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.419±7.17
ENST00000461549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213839 ENST00000436507 N/A 3.036±0.00 0.809±0.00 4.370±1.79 5.054±0.73 2.524±0.75 1.745±0.16 3.257±0.00 1.591±1.13 1.658±0.62 1.521±0.77 3.224±2.56 0.789±0.10 1.527±1.20
ENSG00000232454 ENST00000452964 0.032±0.00 0.097±0.00 0.285±0.00 0.456±0.39 0.971±0.91 0.088±0.00 0.396±0.00 1.207±0.00 1.269±1.24 1.990±0.00 1.177±0.00 0.246±0.15 0.138±0.00 0.600±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028322 ENSMUST00000030003 N/A 28.141±7.50 9.870±0.20 8.696±2.25 10.741±0.75 7.756±2.53 2.450±0.17 6.262±0.97 15.230±9.47 7.155±0.56 5.617±0.47 21.781±11.38 26.674±11.35 21.249±2.04
ENSMUST00000130843 11.963±3.33 32.107±8.38 9.013±0.00 8.665±1.18 10.840±1.43 13.043±3.17 4.836±1.66 8.069±2.48 8.161±3.40 11.018±1.51 N/A 18.335±4.92 7.275±0.00 12.506±0.81
ENSMUST00000143111 N/A N/A N/A 11.061±0.00 N/A N/A N/A N/A N/A N/A N/A 23.966±0.00 41.893±14.66 52.345±0.00
ENSMUST00000152056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.077±0.00
ENSMUSG00000035572 ENSMUST00000107798 5.498±0.20 6.579±1.65 2.789±0.01 2.516±0.00 3.835±0.84 3.304±0.76 1.584±0.05 3.265±0.46 3.727±1.15 3.680±0.62 1.251±0.19 5.073±1.14 4.729±1.55 7.382±2.72
ENSMUST00000130821 4.878±0.00 19.768±11.61 N/A N/A 8.350±2.22 6.433±1.19 N/A N/A 2.764±0.02 5.570±1.32 N/A 9.890±3.10 N/A N/A
ENSMUST00000153803 N/A N/A N/A N/A 3.682±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155551 2.298±0.46 N/A 2.076±0.00 2.481±1.24 1.735±0.24 1.302±0.14 1.001±0.06 1.596±0.29 2.034±0.63 2.145±0.30 1.020±0.10 2.243±0.58 2.258±0.62 1.328±0.48
ENSMUSG00000045973 ENSMUST00000107796 9.830±4.78 46.924±5.81 12.906±2.89 11.705±1.93 16.878±3.17 9.951±2.34 4.002±0.49 14.893±6.75 22.832±10.15 13.478±8.40 6.846±3.51 17.526±3.21 11.848±4.89 1.037±0.63
ENSMUST00000116341 7.515±1.80 N/A 7.707±2.09 7.885±0.00 N/A N/A 3.180±0.36 8.346±0.00 7.916±5.21 N/A 7.453±3.48 12.919±0.00 7.012±5.84 0.646±0.38
ENSMUST00000132815 31.401±4.12 21.852±0.00 N/A 23.234±1.42 22.788±6.95 8.236±1.35 14.211±1.03 26.538±6.35 17.750±12.36 20.587±6.05 14.027±1.57 10.552±0.83 32.421±4.36 3.104±0.34
ENSMUST00000134714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151516 N/A 72.981±13.03 N/A N/A 24.565±0.86 18.651±4.42 N/A 30.358±0.00 15.342±0.00 25.274±2.92 N/A 31.820±3.49 N/A N/A
ENSMUST00000153904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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