C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006XU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000078142-ENSG00000152214 CGP 9606 18:41955206-43115691
GeneTranscriptPositionBiotype
ENSG00000078142 (PIK3C3)
phosphatidylinositol 3-kinase, catalytic subunit type 3 		ENST00000262039 (PIK3C3-001) 41955206-42087830 protein_coding
ENST00000398870 (PIK3C3-002) 41955254-42087830 protein_coding
ENST00000585528 (PIK3C3-007) 41955418-41970499 protein_coding
ENST00000586545 (PIK3C3-003) 41955256-41971443 protein_coding
ENST00000587261 (PIK3C3-011) 42057638-42067410 retained_intron
ENST00000587328 (PIK3C3-015) 42064695-42081396 retained_intron
ENST00000587402 (PIK3C3-012) 42037772-42049975 protein_coding
ENST00000588156 (PIK3C3-014) 42057835-42081421 retained_intron
ENST00000588631 (PIK3C3-013) 42049292-42081184 retained_intron
ENST00000589056 (PIK3C3-005) 42037750-42051313 protein_coding
ENST00000589550 (PIK3C3-009) 41957667-41990602 retained_intron
ENST00000590013 (PIK3C3-010) 42025782-42037817 processed_transcript
ENST00000590220 (PIK3C3-006) 41955262-41957758 processed_transcript
ENST00000591011 (PIK3C3-008) 41957639-41987875 nonsense_mediated_decay
ENST00000593098 (PIK3C3-004) 42025331-42081479 retained_intron
ENST00000597477 (PIK3C3-019) 42033842-42049683 protein_coding
ENSG00000152214 (RIT2)
Ras-like without CAAX 2 		ENST00000326695 (RIT2-001) 42743227-43115691 protein_coding
ENST00000589109 (RIT2-002) 42743227-43115691 protein_coding
ENST00000590910 (RIT2-003) 42743469-43115649 protein_coding
ENST00000594852 (RIT2-004) 42923365-42974095 retained_intron
ENSG00000253040 (RNA5SP454)
RNA, 5S ribosomal pseudogene 454 		ENST00000517231 (RNA5SP454-201) 42270589-42270715 rRNA
ENSG00000267088 (RP11-115N12.1)
 ENST00000591187 (RP11-115N12.1-001) 42089312-42089752 processed_pseudogene
ENSG00000267586 (LINC00907)
long intergenic non-protein coding RNA 907 		ENST00000585627 (LINC00907-002) 42186668-42518953 lincRNA
ENST00000585639 (LINC00907-007) 42186689-42533351 lincRNA
ENST00000586447 (LINC00907-009) 42225964-42233327 lincRNA
ENST00000586990 (LINC00907-003) 42186670-42337296 lincRNA
ENST00000589068 (LINC00907-008) 42186703-42691422 lincRNA
ENST00000591199 (LINC00907-005) 42186670-42290139 lincRNA
ENST00000591381 (LINC00907-006) 42186685-42516937 lincRNA
ENST00000593051 (LINC00907-004) 42186670-42462185 lincRNA
ENST00000593234 (LINC00907-001) 42186668-42459675 lincRNA
ENST00000593316 (LINC00907-011) 42186676-42433375 lincRNA
ENST00000601948 (LINC00907-010) 42159283-42226104 lincRNA
ENSG00000276174 (RP11-687E1.2)
 ENST00000611384 (RP11-687E1.2-001) 42052705-42053030 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0006XU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033628-ENSMUSG00000057455 CGP 10090 18:30272747-31317290
GeneTranscriptPositionBiotype
ENSMUSG00000033628 (Pik3c3)
phosphoinositide-3-kinase, class 3 		ENSMUST00000091978 (Pik3c3-003) 30272872-30343116 protein_coding
ENSMUST00000115811 (Pik3c3-004) 30272870-30330968 protein_coding
ENSMUST00000115812 (Pik3c3-001) 30272747-30348126 protein_coding
ENSMUST00000131405 (Pik3c3-002) 30272927-30348120 nonsense_mediated_decay
ENSMUSG00000055771 (Gm7936)
predicted pseudogene 7936 		ENSMUST00000069529 (Gm7936-201) 30495001-30495375 processed_pseudogene
ENSMUSG00000057455 (Rit2)
Ras-like without CAAX 2 		ENSMUST00000082070 (Rit2-003) 30973489-31317290 nonsense_mediated_decay
ENSMUST00000139924 (Rit2-002) 31206066-31317111 protein_coding
ENSMUST00000153060 (Rit2-001) 30974315-31317133 protein_coding
ENSMUST00000153196 (Rit2-004) 31153271-31212732 processed_transcript
ENSMUSG00000091785 (Rpl29-ps5)
ribosomal protein L29, pseudogene 5 		ENSMUST00000164794 (Rpl29-ps5-201) 30459083-30459559 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006XU_0001ENSG00000078142ENST00000262039ENST00000398870ENST00000585528ENST00000586545ENST00000587261ENST00000587328ENST00000587402ENST00000588156ENST00000588631ENST00000589056ENST00000589550ENST00000590013ENST00000590220ENST00000591011ENST00000593098ENST00000597477ENSG00000152214ENST00000326695ENST00000589109ENST00000590910ENST00000594852ENSG00000253040ENST00000517231ENSG00000267088ENST00000591187ENSG00000267586ENST00000585627ENST00000585639ENST00000586447ENST00000586990ENST00000589068ENST00000591199ENST00000591381ENST00000593051ENST00000593234ENST00000593316ENST00000601948ENSG00000276174ENST00000611384CIL_0006XU_0002ENSMUSG00000033628ENSMUST00000091978ENSMUST00000115811ENSMUST00000115812ENSMUST00000131405ENSMUSG00000055771ENSMUST00000069529ENSMUSG00000057455ENSMUST00000082070ENSMUST00000139924ENSMUST00000153060ENSMUST00000153196ENSMUSG00000091785ENSMUST00000164794
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006XU_0001ENSG00000078142ENST00000262039ENST00000398870ENST00000587328ENST00000587402ENST00000588156ENST00000589550ENST00000590013ENST00000593098ENST00000597477ENSG00000152214ENST00000326695ENST00000590910ENST00000594852ENSG00000253040ENST00000517231ENSG00000267088ENST00000591187ENSG00000267586ENST00000585627ENST00000585639ENST00000586447ENST00000586990ENST00000589068ENST00000591199ENST00000591381ENST00000593051ENST00000593234ENST00000593316ENST00000601948ENSG00000276174ENST00000611384CIL_0006XU_0002ENSMUSG00000033628ENSMUST00000091978ENSMUST00000115811ENSMUST00000115812ENSMUST00000131405ENSMUSG00000055771ENSMUST00000069529ENSMUSG00000057455ENSMUST00000082070ENSMUST00000153060ENSMUST00000153196ENSMUSG00000091785ENSMUST00000164794
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078142 ENST00000262039 1.526±0.00 2.590±0.00 0.772±0.00 4.761±0.61 1.681±0.49 1.077±0.04 0.922±0.55 0.725±0.00 N/A 1.278±0.91 0.978±0.28 1.175±0.52 0.940±0.60 1.608±0.06
ENST00000398870 N/A N/A N/A N/A N/A N/A N/A 1.688±0.00 2.382±0.00 N/A N/A 0.347±0.00 0.315±0.03 1.175±0.00
ENST00000585528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.691±0.00 N/A N/A N/A
ENST00000587402 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.536±0.00 N/A N/A N/A N/A
ENST00000588156 N/A N/A N/A N/A N/A 6.500±0.00 N/A 6.758±0.00 3.958±0.00 2.832±0.00 N/A 9.438±0.00 5.568±0.68 16.214±0.00
ENST00000588631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.433±0.00 7.838±0.00 11.317±0.00
ENST00000590013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.201±0.00 14.249±0.00 20.109±0.00
ENST00000590220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593098 N/A N/A 0.919±0.00 N/A 1.871±0.00 N/A 0.508±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000597477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.187±0.00 N/A
ENSG00000152214 ENST00000326695 N/A N/A N/A 7.001±0.83 N/A 0.211±0.00 N/A N/A N/A N/A N/A 0.067±0.00 0.140±0.01 0.163±0.02
ENST00000589109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A
ENST00000594852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.07 N/A
ENSG00000253040 ENST00000517231 N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000267088 ENST00000591187 N/A 0.042±0.00 0.724±0.00 0.303±0.10 N/A N/A 0.096±0.00 0.040±0.00 N/A N/A N/A 0.050±0.01 N/A 0.042±0.00
ENSG00000267586 ENST00000585627 N/A 0.017±0.00 N/A N/A 0.016±0.00 0.029±0.00 0.005±0.00 N/A N/A N/A N/A 0.009±0.00 N/A N/A
ENST00000585639 N/A N/A N/A 0.406±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586447 N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586990 N/A N/A N/A 0.882±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589068 0.071±0.00 N/A 0.320±0.00 N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A 0.017±0.00 N/A N/A
ENST00000591199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00
ENST00000591381 N/A 0.177±0.00 N/A 0.068±0.00 N/A N/A 0.029±0.00 N/A 0.139±0.00 0.028±0.00 0.009±0.00 0.054±0.00 N/A 0.068±0.00
ENST00000593051 N/A N/A N/A 0.137±0.00 0.079±0.00 N/A 0.026±0.00 N/A N/A N/A N/A 0.026±0.00 N/A 0.037±0.00
ENST00000593234 N/A 0.039±0.00 N/A N/A 0.035±0.00 0.046±0.00 0.009±0.00 0.076±0.00 0.089±0.00 0.021±0.00 N/A 0.016±0.00 N/A N/A
ENST00000593316 N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A
ENST00000601948 N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A
ENSG00000276174 ENST00000611384 N/A 0.060±0.00 0.479±0.00 0.030±0.00 N/A 1.558±1.38 0.228±0.00 N/A N/A 0.068±0.00 N/A 0.687±0.72 0.164±0.00 0.419±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033628 ENSMUST00000091978 N/A 0.484±0.13 N/A 2.532±0.00 0.514±0.00 N/A N/A N/A N/A N/A N/A 1.754±1.32 1.477±0.00 2.105±0.00
ENSMUST00000115811 N/A 0.274±0.00 N/A N/A N/A 0.725±0.00 N/A N/A N/A N/A N/A 0.812±0.32 N/A 0.302±0.00
ENSMUST00000115812 5.153±0.70 0.978±0.32 11.589±0.61 11.239±2.95 3.390±1.32 3.580±1.37 3.138±0.19 4.773±0.09 3.586±1.82 4.719±0.29 4.447±0.25 3.664±3.69 7.583±1.22 2.722±0.25
ENSMUST00000131405 N/A 0.880±0.00 N/A N/A 1.429±0.00 0.944±0.39 N/A N/A 0.521±0.17 N/A N/A 2.419±1.40 N/A N/A
ENSMUSG00000055771 ENSMUST00000069529 0.377±0.24 N/A 0.037±0.00 0.018±0.00 0.995±0.58 0.452±0.16 0.327±0.06 0.128±0.00 0.064±0.04 0.154±0.00 0.179±0.00 N/A 0.327±0.00 N/A
ENSMUSG00000057455 ENSMUST00000082070 N/A N/A N/A 0.530±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153060 0.346±0.28 1.047±0.42 0.104±0.02 10.949±3.35 0.024±0.00 0.758±0.40 0.060±0.00 0.314±0.15 0.007±0.00 0.031±0.00 0.016±0.00 0.012±0.00 0.009±0.01 0.060±0.01
ENSMUST00000153196 N/A 0.909±0.24 N/A N/A N/A N/A N/A 0.191±0.19 N/A N/A N/A 0.040±0.00 N/A 0.186±0.13
ENSMUSG00000091785 ENSMUST00000164794 N/A N/A 0.021±0.00 0.023±0.00 N/A 0.281±0.07 0.116±0.01 N/A 0.007±0.00 N/A 0.126±0.00 N/A 0.168±0.00 N/A

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