C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00071C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174460-ENSG00000175556 CGP 9606 X:118823790-119018355
GeneTranscriptPositionBiotype
ENSG00000174460 (ZCCHC12)
zinc finger, CCHC domain containing 12 		ENST00000310164 (ZCCHC12-001) 118823790-118826968 protein_coding
ENSG00000175556 (LONRF3)
LON peptidase N-terminal domain and ring finger 3 		ENST00000304778 (LONRF3-201) 118974614-119018355 protein_coding
ENST00000371628 (LONRF3-005) 118974750-119017929 protein_coding
ENST00000422289 (LONRF3-202) 118976332-119018355 protein_coding
ENST00000439603 (LONRF3-002) 118975362-119017987 protein_coding
ENST00000472173 (LONRF3-004) 118976332-119017983 processed_transcript
ENST00000481285 (LONRF3-003) 118974618-119017983 nonsense_mediated_decay
ENSG00000203650 (LINC01285)
long intergenic non-protein coding RNA 1285 		ENST00000412422 (LINC01285-001) 118839556-118857886 lincRNA
ENST00000608172 (LINC01285-002) 118839590-118882015 lincRNA
ENSG00000224341 (RP4-562J12.1)
 ENST00000445747 (RP4-562J12.1-001) 118877886-118879185 processed_pseudogene
ENSG00000231270 (RP13-347D8.1)
 ENST00000443421 (RP13-347D8.1-001) 118938153-118939134 processed_pseudogene
CIL_00071C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036699-ENSMUSG00000016239 CGP 10090 X:36195904-36362341
GeneTranscriptPositionBiotype
ENSMUSG00000016239 (Lonrf3)
LON peptidase N-terminal domain and ring finger 3 		ENSMUST00000016383 (Lonrf3-001) 36328353-36362341 protein_coding
ENSMUST00000126147 (Lonrf3-002) 36329216-36341754 protein_coding
ENSMUST00000135758 (Lonrf3-003) 36328353-36342611 retained_intron
ENSMUSG00000036699 (Zcchc12)
zinc finger, CCHC domain containing 12 		ENSMUST00000048067 (Zcchc12-001) 36195946-36199158 protein_coding
ENSMUST00000115256 (Zcchc12-004) 36195986-36199157 protein_coding
ENSMUST00000115257 (Zcchc12-003) 36195959-36199157 protein_coding
ENSMUST00000115258 (Zcchc12-002) 36195904-36199150 protein_coding
ENSMUSG00000081159 (Gm6023)
predicted gene 6023 		ENSMUST00000118217 (Gm6023-001) 36213524-36214129 processed_pseudogene
ENSMUSG00000083130 (Gm14560)
predicted gene 14560 		ENSMUST00000118672 (Gm14560-001) 36212660-36213034 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00071C_0001ENSG00000174460ENST00000310164ENSG00000175556ENST00000304778ENST00000371628ENST00000422289ENST00000439603ENST00000472173ENST00000481285ENSG00000203650ENST00000412422ENST00000608172ENSG00000224341ENST00000445747ENSG00000231270ENST00000443421CIL_00071C_0002ENSMUSG00000016239ENSMUST00000016383ENSMUST00000126147ENSMUST00000135758ENSMUSG00000036699ENSMUST00000048067ENSMUST00000115256ENSMUST00000115257ENSMUST00000115258ENSMUSG00000081159ENSMUST00000118217ENSMUSG00000083130ENSMUST00000118672
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00071C_0001ENSG00000174460ENST00000310164ENSG00000175556ENST00000304778ENST00000371628ENST00000422289ENST00000439603ENST00000481285ENSG00000203650ENST00000412422ENST00000608172ENSG00000224341ENST00000445747ENSG00000231270ENST00000443421CIL_00071C_0002ENSMUSG00000016239ENSMUST00000016383ENSMUST00000126147ENSMUST00000135758ENSMUSG00000036699ENSMUST00000048067ENSMUST00000115256ENSMUST00000115257ENSMUST00000115258ENSMUSG00000081159ENSMUST00000118217ENSMUSG00000083130ENSMUST00000118672
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000174460 ENST00000310164 0.022±0.00 0.125±0.00 N/A 7.564±2.01 0.069±0.02 0.336±0.20 N/A 0.022±0.00 0.052±0.00 0.107±0.00 0.039±0.00 3.871±3.57 0.185±0.00 1.039±0.52
ENSG00000175556 ENST00000304778 N/A 0.131±0.00 0.106±0.00 N/A 0.636±0.00 N/A 0.093±0.03 0.467±0.00 0.796±0.00 0.940±0.00 N/A 0.179±0.10 0.073±0.03 0.161±0.00
ENST00000371628 0.249±0.00 N/A N/A N/A N/A 0.992±0.00 0.228±0.00 0.411±0.00 1.741±0.00 1.734±0.01 1.568±0.00 0.306±0.13 0.157±0.00 0.577±0.45
ENST00000422289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A
ENST00000439603 N/A 0.286±0.00 N/A 0.381±0.05 N/A 0.543±0.00 N/A 0.415±0.00 N/A N/A N/A 0.336±0.08 0.111±0.00 N/A
ENST00000472173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481285 0.154±0.00 N/A N/A N/A N/A 0.572±0.00 N/A 0.867±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000203650 ENST00000412422 0.049±0.00 0.081±0.00 N/A 0.338±0.00 0.010±0.00 0.052±0.00 0.041±0.00 0.055±0.00 0.064±0.00 0.027±0.00 N/A 0.047±0.03 0.029±0.01 0.125±0.11
ENST00000608172 N/A N/A 0.185±0.00 0.268±0.03 N/A 0.204±0.00 0.172±0.00 0.053±0.00 0.180±0.00 0.171±0.00 N/A 0.054±0.01 N/A 0.113±0.03
ENSG00000224341 ENST00000445747 0.023±0.00 N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231270 ENST00000443421 N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A 0.029±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016239 ENSMUST00000016383 0.355±0.16 1.139±0.62 N/A 1.436±0.00 0.241±0.06 1.272±0.30 0.102±0.02 1.057±0.24 0.761±0.34 1.117±0.32 0.211±0.15 1.332±0.69 8.162±4.18 3.489±0.48
ENSMUST00000126147 N/A N/A N/A N/A 0.184±0.00 N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135758 0.203±0.00 2.431±1.06 N/A N/A 0.284±0.14 0.805±0.47 N/A 0.347±0.04 0.119±0.00 0.287±0.05 N/A 1.285±0.55 N/A N/A
ENSMUSG00000036699 ENSMUST00000048067 0.096±0.00 0.363±0.08 0.171±0.00 26.476±7.43 N/A 0.488±0.15 0.078±0.02 0.056±0.00 0.153±0.09 N/A 0.004±0.00 0.533±0.25 0.119±0.04 N/A
ENSMUST00000115256 N/A N/A N/A 10.656±4.55 N/A N/A N/A N/A N/A N/A N/A 0.424±0.23 N/A 0.767±0.11
ENSMUST00000115257 0.028±0.01 0.471±0.00 N/A N/A 0.057±0.01 0.710±0.00 0.049±0.00 0.117±0.02 0.053±0.05 0.077±0.04 0.019±0.00 0.389±0.21 0.040±0.03 N/A
ENSMUST00000115258 N/A 0.553±0.11 N/A 4.847±0.00 N/A 0.658±0.15 N/A N/A 0.040±0.00 N/A N/A 0.449±0.16 N/A 0.240±0.15
ENSMUSG00000081159 ENSMUST00000118217 0.063±0.00 0.169±0.00 N/A 0.208±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00
ENSMUSG00000083130 ENSMUST00000118672 N/A 0.406±0.12 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.279±0.00

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