C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00074B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188921-ENSG00000171855 CGP 9606 9:20999515-21077963
GeneTranscriptPositionBiotype
ENSG00000171855 (IFNB1)
interferon, beta 1, fibroblast 		ENST00000380232 (IFNB1-002) 21077105-21077963 protein_coding
ENSG00000188921 (PTPLAD2)
protein tyrosine phosphatase-like A domain containing 2 		ENST00000488436 (PTPLAD2-002) 21015137-21026745 processed_transcript
ENST00000495827 (PTPLAD2-001) 20999515-21031636 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00074B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028497-ENSMUSG00000048806 CGP 10090 4:88396144-88522774
GeneTranscriptPositionBiotype
ENSMUSG00000028497 (Ptplad2)
protein tyrosine phosphatase-like A domain containing 2 		ENSMUST00000030221 (Ptplad2-201) 88412930-88438926 protein_coding
ENSMUST00000132493 (Ptplad2-002) 88396144-88438915 protein_coding
ENSMUST00000151280 (Ptplad2-001) 88410341-88438928 protein_coding
ENSMUSG00000038368 (Focad)
focadhesin 		ENSMUST00000097992 (Focad-001) 88094630-88411006 protein_coding
ENSMUST00000107147 (Focad-004) 88400565-88411011 protein_coding
ENSMUST00000107148 (Focad-003) 88345367-88411009 retained_intron
ENSMUST00000129967 (Focad-002) 88094629-88121812 retained_intron
ENSMUST00000130603 (Focad-007) 88303137-88326235 retained_intron
ENSMUST00000144388 (Focad-006) 88287635-88303630 processed_transcript
ENSMUST00000147527 (Focad-005) 88124436-88154720 retained_intron
ENSMUST00000159342 (Focad-009) 88121299-88411004 protein_coding
ENSMUST00000161058 (Focad-008) 88094645-88183044 retained_intron
ENSMUST00000162039 (Focad-010) 88400350-88407219 processed_transcript
ENSMUSG00000048806 (Ifnb1)
interferon beta 1, fibroblast 		ENSMUST00000055671 (Ifnb1-001) 88522025-88522774 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00074B_0001ENSG00000171855ENST00000380232ENSG00000188921ENST00000488436ENST00000495827CIL_00074B_0002ENSMUSG00000028497ENSMUST00000030221ENSMUST00000132493ENSMUST00000151280ENSMUSG00000038368ENSMUST00000097992ENSMUST00000107147ENSMUST00000107148ENSMUST00000129967ENSMUST00000130603ENSMUST00000144388ENSMUST00000147527ENSMUST00000159342ENSMUST00000161058ENSMUST00000162039ENSMUSG00000048806ENSMUST00000055671
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00074B_0001ENSG00000171855ENST00000380232ENSG00000188921ENST00000488436ENST00000495827CIL_00074B_0002ENSMUSG00000028497ENSMUST00000030221ENSMUST00000151280ENSMUSG00000038368ENSMUST00000097992ENSMUST00000144388ENSMUST00000159342ENSMUSG00000048806ENSMUST00000055671
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171855 ENST00000380232 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A 0.179±0.00 N/A 0.034±0.00
ENSG00000188921 ENST00000488436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.118±0.00 N/A N/A N/A
ENST00000495827 0.351±0.00 0.335±0.00 0.333±0.00 0.298±0.17 0.492±0.00 1.182±0.42 0.237±0.01 0.242±0.12 0.735±0.62 1.793±0.16 0.088±0.00 0.818±0.45 1.281±0.32 0.573±0.23
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028497 ENSMUST00000030221 N/A N/A N/A N/A 5.672±1.86 N/A N/A N/A N/A N/A N/A 4.438±0.00 N/A N/A
ENSMUST00000132493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151280 4.086±1.26 N/A 6.540±0.16 1.453±0.57 3.135±0.38 1.954±0.34 1.524±0.07 2.352±0.00 1.579±0.12 3.698±0.00 0.536±0.11 3.105±0.70 1.643±1.33 0.655±0.39
ENSMUSG00000038368 ENSMUST00000097992 5.942±3.25 4.910±0.60 2.449±0.35 3.118±2.22 3.950±0.50 2.201±0.34 2.219±0.81 2.120±0.28 1.842±0.60 2.603±0.95 1.710±0.45 4.973±0.87 1.930±0.49 1.895±0.60
ENSMUST00000107147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144388 N/A N/A N/A 44.442±0.00 N/A N/A N/A N/A N/A N/A N/A 35.558±0.00 19.921±3.93 12.916±0.00
ENSMUST00000147527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159342 N/A N/A N/A 1.795±0.00 N/A 0.664±0.03 N/A N/A 0.521±0.09 N/A 0.404±0.00 2.167±0.00 0.708±0.20 N/A
ENSMUST00000161058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048806 ENSMUST00000055671 N/A N/A 0.023±0.00 0.012±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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