C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007BI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124160-ENSG00000101017 CGP 9606 20:46060985-46129863
GeneTranscriptPositionBiotype
ENSG00000101017 (CD40)
CD40 molecule, TNF receptor superfamily member 5 		ENST00000372276 (CD40-002) 46118316-46129863 protein_coding
ENST00000372285 (CD40-001) 46118272-46129863 protein_coding
ENST00000461171 (CD40-004) 46122318-46127161 processed_transcript
ENST00000466205 (CD40-006) 46118348-46129126 nonsense_mediated_decay
ENST00000477696 (CD40-005) 46118373-46129004 processed_transcript
ENST00000489304 (CD40-003) 46118351-46129863 processed_transcript
ENST00000620709 (CD40-201) 46118278-46129659 protein_coding
ENSG00000124160 (NCOA5)
nuclear receptor coactivator 5 		ENST00000290231 (NCOA5-001) 46060985-46089952 protein_coding
ENST00000372291 (NCOA5-002) 46067055-46089952 protein_coding
ENSG00000213820 (RPL13P2)
ribosomal protein L13 pseudogene 2 		ENST00000440687 (RPL13P2-001) 46099518-46100176 processed_pseudogene
CIL_0007BI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039804-ENSMUSG00000017652 CGP 10090 2:165000357-165072948
GeneTranscriptPositionBiotype
ENSMUSG00000017652 (Cd40)
CD40 antigen 		ENSMUST00000017799 (Cd40-001) 165055627-165072948 protein_coding
ENSMUST00000073707 (Cd40-201) 165055636-165071654 protein_coding
ENSMUST00000081310 (Cd40-005) 165055680-165070745 protein_coding
ENSMUST00000140951 (Cd40-003) 165055681-165062780 protein_coding
ENSMUST00000153105 (Cd40-006) 165062676-165066695 retained_intron
ENSMUST00000154443 (Cd40-004) 165055627-165062723 nonsense_mediated_decay
ENSMUST00000184221 (Cd40-002) 165055704-165071000 nonsense_mediated_decay
ENSMUSG00000039804 (Ncoa5)
nuclear receptor coactivator 5 		ENSMUST00000040381 (Ncoa5-001) 165000357-165034867 protein_coding
ENSMUST00000121377 (Ncoa5-007) 165000360-165034817 protein_coding
ENSMUST00000122070 (Ncoa5-008) 165000363-165034788 protein_coding
ENSMUST00000123347 (Ncoa5-002) 165002681-165004663 retained_intron
ENSMUST00000126685 (Ncoa5-004) 165022672-165023213 processed_transcript
ENSMUST00000127545 (Ncoa5-003) 165010120-165034803 retained_intron
ENSMUST00000141663 (Ncoa5-006) 165022942-165034787 retained_intron
ENSMUST00000153905 (Ncoa5-005) 165012997-165034829 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007BI_0001ENSG00000101017ENST00000372276ENST00000372285ENST00000461171ENST00000466205ENST00000477696ENST00000489304ENST00000620709ENSG00000124160ENST00000290231ENST00000372291ENSG00000213820ENST00000440687CIL_0007BI_0002ENSMUSG00000017652ENSMUST00000017799ENSMUST00000073707ENSMUST00000081310ENSMUST00000140951ENSMUST00000153105ENSMUST00000154443ENSMUST00000184221ENSMUSG00000039804ENSMUST00000040381ENSMUST00000121377ENSMUST00000122070ENSMUST00000123347ENSMUST00000126685ENSMUST00000127545ENSMUST00000141663ENSMUST00000153905
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007BI_0001ENSG00000101017ENST00000372276ENST00000372285ENST00000461171ENST00000466205ENST00000477696ENST00000489304ENST00000620709ENSG00000124160ENST00000290231ENST00000372291ENSG00000213820ENST00000440687CIL_0007BI_0002ENSMUSG00000017652ENSMUST00000017799ENSMUST00000073707ENSMUST00000081310ENSMUST00000140951ENSMUST00000153105ENSMUST00000154443ENSMUST00000184221ENSMUSG00000039804ENSMUST00000040381ENSMUST00000122070
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101017 ENST00000372276 N/A N/A N/A 0.207±0.00 N/A N/A 0.435±0.00 N/A N/A 0.927±0.00 0.365±0.00 0.262±0.00 N/A N/A
ENST00000372285 N/A 7.100±0.00 0.348±0.00 0.385±0.02 1.414±1.09 0.389±0.00 0.846±0.61 1.590±0.29 1.691±0.72 0.526±0.00 1.853±0.00 2.183±1.72 4.908±1.67 0.803±0.57
ENST00000461171 N/A N/A N/A 0.434±0.00 N/A N/A 0.925±0.00 N/A N/A 0.963±0.00 N/A N/A N/A N/A
ENST00000466205 N/A N/A N/A 0.919±0.00 2.463±0.00 3.914±0.00 0.899±0.00 2.077±0.00 2.491±0.00 15.933±0.00 2.307±0.00 0.383±0.00 3.073±0.00 2.838±0.00
ENST00000477696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.335±0.00 N/A N/A
ENST00000489304 N/A N/A N/A N/A N/A 0.906±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620709 N/A 5.941±0.00 N/A 0.578±0.00 2.515±0.00 1.084±0.00 N/A 0.681±0.00 0.561±0.00 7.447±0.00 0.509±0.00 2.243±0.00 1.160±0.00 1.862±0.00
ENSG00000124160 ENST00000290231 2.962±0.00 6.295±0.00 N/A 1.145±0.51 2.993±0.00 3.102±0.00 5.279±0.00 2.852±1.97 2.714±0.86 1.979±0.24 5.864±0.00 11.193±10.55 13.545±4.57 23.130±9.55
ENST00000372291 N/A N/A N/A N/A 4.324±0.00 2.450±0.00 1.804±0.00 1.842±0.00 N/A 1.762±0.00 1.532±0.00 N/A N/A 13.499±0.00
ENSG00000213820 ENST00000440687 0.173±0.00 0.714±0.00 N/A 0.283±0.00 0.639±0.00 1.003±0.00 0.045±0.00 0.262±0.00 0.134±0.00 0.656±0.00 0.249±0.00 0.137±0.00 N/A 0.532±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017652 ENSMUST00000017799 0.304±0.14 0.178±0.03 0.243±0.04 0.163±0.06 0.675±0.00 0.258±0.09 0.195±0.00 0.232±0.05 0.116±0.05 N/A 0.107±0.00 0.137±0.05 0.098±0.01 0.064±0.02
ENSMUST00000073707 0.985±0.30 0.852±0.29 1.096±0.05 0.788±0.06 6.363±2.10 0.573±0.23 0.451±0.22 1.002±0.34 0.559±0.25 5.327±1.17 0.129±0.05 0.928±0.55 0.538±0.21 0.049±0.00
ENSMUST00000081310 1.792±0.26 0.889±0.21 N/A 1.664±0.00 10.611±3.09 1.030±0.25 1.161±0.37 1.697±0.42 0.650±0.37 7.103±0.00 0.170±0.06 0.935±0.30 0.571±0.00 0.196±0.09
ENSMUST00000140951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A N/A
ENSMUST00000153105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.730±0.26 0.751±0.00 0.194±0.04
ENSMUST00000154443 N/A 1.491±0.17 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184221 N/A N/A 0.950±0.12 0.345±0.19 N/A N/A 0.453±0.08 0.743±0.24 0.224±0.12 N/A 0.159±0.11 0.418±0.09 0.320±0.13 N/A
ENSMUSG00000039804 ENSMUST00000040381 7.754±3.07 7.558±3.04 7.789±2.37 27.070±10.80 8.763±1.72 7.504±1.76 4.747±1.75 10.706±1.03 5.679±2.53 8.665±2.71 2.464±0.56 11.009±5.20 7.360±2.82 18.516±1.28
ENSMUST00000121377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000122070 2.095±0.48 2.952±0.48 3.004±0.61 12.562±0.90 4.720±2.45 2.535±0.00 1.987±0.52 N/A 1.825±0.64 2.220±0.51 1.894±0.36 8.459±4.59 4.962±2.54 N/A
ENSMUST00000123347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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