C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007LK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
PAX5 UCNEbase 9606 9:36978917-37340407
GeneTranscriptPositionBiotype
ENSG00000125385 (RP11-297B17.2)
 ENST00000354277 (RP11-297B17.2-001) 37046835-37047237 processed_pseudogene
ENSG00000147905 (ZCCHC7)
zinc finger, CCHC domain containing 7 		ENST00000322831 (ZCCHC7-001) 37120605-37187054 protein_coding
ENST00000336755 (ZCCHC7-003) 37120539-37358149 protein_coding
ENST00000461038 (ZCCHC7-004) 37120636-37358149 processed_transcript
ENST00000463625 (ZCCHC7-006) 37284163-37354802 processed_transcript
ENST00000481507 (ZCCHC7-008) 37326924-37357390 processed_transcript
ENST00000488607 (ZCCHC7-002) 37144932-37356980 processed_transcript
ENST00000496099 (ZCCHC7-009) 37327320-37357165 processed_transcript
ENST00000497924 (ZCCHC7-007) 37326034-37357159 processed_transcript
ENST00000534928 (ZCCHC7-201) 37120598-37358146 protein_coding
ENSG00000196092 (PAX5)
paired box 5 		ENST00000358127 (PAX5-001) 36833275-37034185 protein_coding
ENST00000377840 (PAX5-002) 36840172-37034041 nonsense_mediated_decay
ENST00000377847 (PAX5-012) 36840551-37034031 protein_coding
ENST00000377852 (PAX5-003) 36840172-37034041 protein_coding
ENST00000377853 (PAX5-004) 36840172-37034041 protein_coding
ENST00000414447 (PAX5-013) 36840551-37034031 protein_coding
ENST00000446742 (PAX5-008) 36840551-37034031 protein_coding
ENST00000520083 (PAX5-016) 36922694-36966589 retained_intron
ENST00000520154 (PAX5-007) 36840172-37034041 protein_coding
ENST00000520281 (PAX5-005) 36840551-37034031 protein_coding
ENST00000522003 (PAX5-009) 36840551-37034031 protein_coding
ENST00000522932 (PAX5-015) 36840558-37002752 protein_coding
ENST00000523145 (PAX5-010) 36840551-37034031 protein_coding
ENST00000523241 (PAX5-006) 36840172-37034041 protein_coding
ENST00000523493 (PAX5-011) 36840551-37034031 nonsense_mediated_decay
ENST00000524340 (PAX5-014) 36840558-37002675 protein_coding
ENSG00000200502 (Y_RNA)
Y RNA 		ENST00000363632 (Y_RNA.1-355) 37160137-37160237 misc_RNA
ENSG00000216070 (AL158155.1)
 ENST00000401251 (AL158155.1-201) 37296023-37296104 miRNA
ENSG00000228292 (RP11-220I1.4)
 ENST00000404812 (RP11-220I1.4-001) 37205112-37205368 processed_pseudogene
ENSG00000232920 (LINC01400)
long intergenic non-protein coding RNA 1400 		ENST00000426358 (LINC01400-001) 37073531-37075792 lincRNA
ENSG00000233242 (RP11-220I1.2)
 ENST00000426946 (RP11-220I1.2-001) 37112548-37115490 antisense
ENSG00000250850 (RP11-297B17.3)
 ENST00000509911 (RP11-297B17.3-001) 37002697-37008040 antisense
ENSG00000260100 (RP11-220I1.5)
 ENST00000569583 (RP11-220I1.5-001) 37078813-37079776 lincRNA
CIL_0007LK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
PAX5 UCNEbase 10090 4:44656884-44921390
GeneTranscriptPositionBiotype
ENSMUSG00000014030 (Pax5)
paired box 5 		ENSMUST00000014174 (Pax5-001) 44531145-44710487 protein_coding
ENSMUST00000102932 (Pax5-004) 44531145-44710418 protein_coding
ENSMUST00000107825 (Pax5-003) 44531145-44710418 protein_coding
ENSMUST00000107826 (Pax5-006) 44531145-44710418 protein_coding
ENSMUST00000107827 (Pax5-005) 44531145-44710418 protein_coding
ENSMUST00000134968 (Pax5-010) 44531497-44710408 protein_coding
ENSMUST00000143235 (Pax5-002) 44531145-44710418 nonsense_mediated_decay
ENSMUST00000146335 (Pax5-007) 44679440-44704006 protein_coding
ENSMUST00000165417 (Pax5-009) 44531497-44710408 protein_coding
ENSMUST00000172866 (Pax5-016) 44531497-44710408 protein_coding
ENSMUST00000172949 (Pax5-008) 44569971-44683815 processed_transcript
ENSMUST00000173733 (Pax5-014) 44531497-44710408 protein_coding
ENSMUST00000173821 (Pax5-011) 44531497-44710408 protein_coding
ENSMUST00000174242 (Pax5-013) 44531497-44710408 nonsense_mediated_decay
ENSMUST00000174319 (Pax5-012) 44531497-44710408 protein_coding
ENSMUST00000174761 (Pax5-017) 44679454-44703413 processed_transcript
ENSMUST00000186542 (Pax5-019) 44679454-44703413 protein_coding
ENSMUST00000187197 (Pax5-015) 44679454-44703413 processed_transcript
ENSMUST00000191036 (Pax5-018) 44679454-44703413 processed_transcript
ENSMUSG00000080916 (Gm12463)
predicted gene 12463 		ENSMUST00000118271 (Gm12463-001) 44752277-44753125 processed_pseudogene
ENSMUSG00000086211 (Gm12462)
predicted gene 12462 		ENSMUST00000140826 (Gm12462-001) 44664415-44685347 antisense
ENSMUSG00000094842 (Gm22639)
predicted gene, 22639 		ENSMUST00000175591 (Gm22639-201) 44865307-44865431 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007LK_0001ENSG00000125385ENST00000354277ENSG00000147905ENST00000322831ENST00000336755ENST00000461038ENST00000463625ENST00000481507ENST00000488607ENST00000496099ENST00000497924ENST00000534928ENSG00000196092ENST00000358127ENST00000377840ENST00000377847ENST00000377852ENST00000377853ENST00000414447ENST00000446742ENST00000520083ENST00000520154ENST00000520281ENST00000522003ENST00000522932ENST00000523145ENST00000523241ENST00000523493ENST00000524340ENSG00000200502ENST00000363632ENSG00000216070ENST00000401251ENSG00000228292ENST00000404812ENSG00000232920ENST00000426358ENSG00000233242ENST00000426946ENSG00000250850ENST00000509911ENSG00000260100ENST00000569583CIL_0007LK_0002ENSMUSG00000014030ENSMUST00000014174ENSMUST00000102932ENSMUST00000107825ENSMUST00000107826ENSMUST00000107827ENSMUST00000134968ENSMUST00000143235ENSMUST00000146335ENSMUST00000165417ENSMUST00000172866ENSMUST00000172949ENSMUST00000173733ENSMUST00000173821ENSMUST00000174242ENSMUST00000174319ENSMUST00000174761ENSMUST00000186542ENSMUST00000187197ENSMUST00000191036ENSMUSG00000080916ENSMUST00000118271ENSMUSG00000086211ENSMUST00000140826ENSMUSG00000094842ENSMUST00000175591
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007LK_0001ENSG00000125385ENST00000354277ENSG00000147905ENST00000322831ENST00000336755ENST00000461038ENST00000463625ENST00000497924ENST00000534928ENSG00000196092ENST00000358127ENST00000446742ENST00000520083ENST00000520154ENST00000520281ENST00000523145ENSG00000200502ENST00000363632ENSG00000216070ENST00000401251ENSG00000228292ENST00000404812ENSG00000232920ENST00000426358ENSG00000233242ENST00000426946ENSG00000250850ENST00000509911ENSG00000260100ENST00000569583CIL_0007LK_0002ENSMUSG00000014030ENSMUST00000014174ENSMUST00000102932ENSMUST00000107825ENSMUST00000107826ENSMUST00000107827ENSMUST00000134968ENSMUST00000143235ENSMUST00000146335ENSMUST00000165417ENSMUST00000172866ENSMUST00000172949ENSMUST00000173733ENSMUST00000173821ENSMUST00000174242ENSMUST00000187197ENSMUST00000191036ENSMUSG00000080916ENSMUST00000118271ENSMUSG00000086211ENSMUST00000140826ENSMUSG00000094842ENSMUST00000175591
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125385 ENST00000354277 N/A 0.037±0.00 N/A N/A 0.037±0.00 0.035±0.00 N/A N/A N/A 0.035±0.00 0.286±0.00 0.071±0.00 N/A N/A
ENSG00000147905 ENST00000322831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.972±0.00 N/A 1.710±0.00 N/A
ENST00000336755 2.510±0.00 2.940±0.00 N/A 1.277±0.19 2.932±0.72 2.440±1.20 1.666±0.00 2.532±0.00 1.521±0.57 2.187±1.51 0.796±0.00 3.953±1.26 3.009±0.89 7.113±0.80
ENST00000461038 N/A 1.829±0.00 N/A 1.094±0.00 1.093±0.00 1.493±0.00 N/A 1.062±0.00 0.375±0.00 2.672±0.00 1.080±0.00 1.135±0.00 N/A 1.367±0.00
ENST00000463625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.643±0.00 N/A N/A N/A
ENST00000481507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497924 N/A N/A N/A N/A N/A 1.714±0.00 N/A N/A N/A N/A 1.416±0.00 4.556±0.00 N/A N/A
ENST00000534928 1.092±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196092 ENST00000358127 0.012±0.00 11.589±0.00 N/A 0.004±0.00 N/A 0.014±0.00 0.018±0.01 0.018±0.00 0.007±0.00 N/A 0.003±0.00 0.005±0.00 0.031±0.00 N/A
ENST00000377840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000377847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000377852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000377853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A
ENST00000520083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A
ENST00000520154 N/A N/A N/A N/A 0.576±0.00 0.536±0.00 N/A N/A N/A 0.651±0.00 N/A 0.036±0.00 N/A N/A
ENST00000520281 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.381±0.00 N/A N/A N/A N/A
ENST00000522003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523145 N/A N/A N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200502 ENST00000363632 1.411±0.00 1.714±0.00 N/A N/A 56.557±55.82 N/A N/A N/A N/A N/A N/A N/A N/A 1.309±0.00
ENSG00000216070 ENST00000401251 N/A 0.582±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228292 ENST00000404812 0.107±0.00 0.723±0.00 N/A 0.330±0.00 0.108±0.00 0.357±0.31 0.357±0.00 N/A 0.049±0.00 0.499±0.34 0.049±0.00 4.092±0.00 N/A 0.245±0.00
ENSG00000232920 ENST00000426358 N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.01
ENSG00000233242 ENST00000426946 N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A 0.140±0.00 N/A 0.031±0.00 N/A 0.173±0.00
ENSG00000250850 ENST00000509911 0.078±0.00 N/A N/A 0.220±0.00 0.090±0.00 N/A 0.037±0.00 N/A 0.033±0.00 0.241±0.00 0.050±0.00 0.236±0.00 N/A N/A
ENSG00000260100 ENST00000569583 0.063±0.00 N/A N/A 0.148±0.13 N/A N/A N/A 0.151±0.00 N/A N/A N/A 0.017±0.00 N/A 0.146±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014030 ENSMUST00000014174 0.033±0.01 0.194±0.09 N/A N/A 5.334±3.22 0.446±0.18 0.040±0.00 0.287±0.02 0.105±0.07 1.302±0.31 0.471±0.00 0.080±0.01 0.075±0.05 8.924±2.27
ENSMUST00000102932 0.046±0.00 N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A
ENSMUST00000107825 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENSMUST00000107826 N/A N/A 0.017±0.00 N/A N/A N/A 0.023±0.00 0.023±0.00 N/A N/A N/A 0.067±0.00 0.042±0.00 N/A
ENSMUST00000107827 0.062±0.00 N/A 0.003±0.00 N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A 0.147±0.09 N/A N/A
ENSMUST00000134968 N/A N/A N/A N/A N/A 0.478±0.06 N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A
ENSMUST00000143235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A N/A
ENSMUST00000146335 N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.02 N/A N/A N/A N/A N/A
ENSMUST00000165417 0.056±0.00 0.075±0.00 N/A N/A N/A N/A 0.026±0.00 0.050±0.00 0.106±0.05 N/A N/A 0.069±0.03 0.020±0.00 N/A
ENSMUST00000172866 0.052±0.00 0.161±0.00 N/A N/A 6.627±2.00 0.590±0.44 0.201±0.13 N/A 0.183±0.09 1.109±0.21 N/A N/A 0.019±0.00 N/A
ENSMUST00000172949 N/A N/A N/A N/A N/A N/A 0.099±0.00 N/A N/A N/A 0.279±0.00 0.143±0.01 N/A N/A
ENSMUST00000173733 N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173821 N/A N/A N/A N/A N/A 0.585±0.00 0.124±0.00 N/A N/A N/A 1.099±0.00 N/A N/A N/A
ENSMUST00000174242 N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187197 N/A 0.836±0.00 N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A 0.701±0.33 N/A N/A
ENSMUST00000191036 1.085±0.00 N/A N/A 0.628±0.00 N/A N/A N/A N/A 0.543±0.00 N/A N/A N/A 0.107±0.00 N/A
ENSMUSG00000080916 ENSMUST00000118271 0.070±0.03 N/A 0.030±0.01 0.015±0.00 0.184±0.07 0.151±0.00 0.092±0.06 0.122±0.05 0.046±0.03 N/A N/A 0.319±0.20 0.023±0.00 0.584±0.39
ENSMUSG00000086211 ENSMUST00000140826 N/A N/A N/A 0.007±0.00 0.219±0.00 N/A N/A 0.012±0.00 0.015±0.00 N/A N/A N/A 0.005±0.00 10.920±3.87
ENSMUSG00000094842 ENSMUST00000175591 N/A N/A 13.963±0.00 1.210±0.00 N/A N/A 991.893±110.87 N/A N/A N/A N/A N/A N/A N/A

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