C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007OO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
GXYLT1 UCNEbase 9606 12:41355369-41588365
GeneTranscriptPositionBiotype
ENSG00000165966 (PDZRN4)
PDZ domain containing ring finger 4 		ENST00000298919 (PDZRN4-003) 41437739-41574582 protein_coding
ENST00000402685 (PDZRN4-001) 41188448-41574118 protein_coding
ENST00000539469 (PDZRN4-002) 41437683-41574332 protein_coding
ENST00000548316 (PDZRN4-004) 41509551-41574590 retained_intron
ENSG00000257228 (RP11-413B19.2)
 ENST00000547168 (RP11-413B19.2-001) 41409467-41473510 antisense
ENST00000548450 (RP11-413B19.2-002) 41411525-41412477 antisense

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0007OO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
GXYLT1 UCNEbase 10090 15:92514543-92787417
GeneTranscriptPositionBiotype
ENSMUSG00000036218 (Pdzrn4)
PDZ domain containing RING finger 4 		ENSMUST00000035399 (Pdzrn4-201) 92597109-92771819 protein_coding
ENSMUST00000169942 (Pdzrn4-202) 92396915-92771819 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007OO_0001ENSG00000165966ENST00000298919ENST00000402685ENST00000539469ENST00000548316ENSG00000257228ENST00000547168ENST00000548450CIL_0007OO_0002ENSMUSG00000036218ENSMUST00000035399ENSMUST00000169942
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007OO_0001ENSG00000165966ENST00000298919ENST00000402685ENST00000539469ENST00000548316ENSG00000257228ENST00000547168ENST00000548450CIL_0007OO_0002ENSMUSG00000036218ENSMUST00000035399ENSMUST00000169942
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165966 ENST00000298919 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A 0.335±0.00 0.138±0.00 N/A N/A N/A
ENST00000402685 0.092±0.00 1.423±0.00 N/A 0.779±0.17 1.029±0.72 3.031±1.36 0.034±0.00 0.153±0.00 3.304±3.29 0.202±0.10 0.110±0.00 0.547±0.25 1.321±1.25 2.235±0.32
ENST00000539469 0.070±0.00 N/A N/A 0.324±0.11 N/A N/A 0.093±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000548316 0.145±0.00 0.486±0.00 0.246±0.00 0.411±0.00 0.472±0.35 2.881±1.79 0.048±0.00 0.201±0.02 0.060±0.00 0.553±0.00 0.070±0.00 0.121±0.00 1.238±0.00 1.412±0.73
ENSG00000257228 ENST00000547168 0.037±0.00 0.110±0.00 N/A 0.012±0.00 0.035±0.00 0.033±0.00 0.033±0.00 N/A N/A N/A N/A N/A 0.027±0.00 0.104±0.03
ENST00000548450 N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A 2.358±0.00 N/A N/A N/A 0.036±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036218 ENSMUST00000035399 0.180±0.10 0.028±0.00 0.065±0.05 4.336±3.34 0.045±0.01 N/A N/A 0.175±0.03 0.011±0.01 N/A 0.122±0.07 0.499±0.44 0.012±0.01 0.365±0.10
ENSMUST00000169942 N/A 0.041±0.02 0.054±0.01 1.361±0.00 N/A 0.126±0.06 0.494±0.11 0.051±0.01 0.011±0.01 0.096±0.02 N/A 1.207±0.97 0.018±0.00 N/A

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