C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8399
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000082300 Gm8399-201 ENSMUSG00000043889 10090 + 13:81064684-81065803 pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000082300
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000082300 3.929±0.75 1.307±0.32 19.778±11.26 27.749±27.38 2.001±0.48 2.839±0.48 0.468±0.06 1.216±0.35 2.589±3.52 1.853±0.24 0.154±0.13 3.324±2.32 9.579±13.05 1.625±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Q4 CIL_0007Q4_0002 VISTA 13:80488037-81088037

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1197
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1181
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1181
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 953
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 942
ENSDART00000080664 protein_coding Danio_rerio 0 911
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 909
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 904
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 893
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 885
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 828
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 800
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 688
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 665
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 933
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 1014
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1338
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1375
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 979
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 1171
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 1149
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 424
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 972
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 1138
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 961
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 1144
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 979
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 797
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 1149
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 782
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 1018
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 894
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 351
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 1120
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 782
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 952
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 826
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 562
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 955
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 628
ENST00000423391 ACTBL2-001 protein_coding Homo_sapiens 0 846
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 680
ENST00000425123 ACTG1P4-001 processed_pseudogene Homo_sapiens 0 904
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 1018
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 950
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 778
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 826
ENST00000431775 ACTG1P3-001 processed_pseudogene Homo_sapiens 0 863
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 527
ENST00000435871 ACTBP12-001 transcribed_processed_pseudogene Homo_sapiens 0 460
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 1009
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 695
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 333
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 569
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 375
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 990
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 1155
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 1038
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 933
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 948
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 348
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 534
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 556
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 276
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 979
ENST00000486001 RP11-4K3__A.5-001 processed_pseudogene Homo_sapiens 0 464
ENST00000491397 AMY2B-003 processed_transcript Homo_sapiens 0 904
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 887
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 758
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 846
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 710
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 1129
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 291
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 407
ENST00000558391 RP11-752G15.9-001 transcribed_processed_pseudogene Homo_sapiens 0 636
ENST00000560958 RP11-752G15.9-002 processed_transcript Homo_sapiens 0 636
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 385
ENST00000567299 CTC-543D15.1-001 processed_pseudogene Homo_sapiens 0 355
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 660
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 405
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 682
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 595
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 857
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1375
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 946
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1375
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 784
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1375
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 787
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 1225
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 542
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1375
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 959
ENST00000587663 ACTBP9-001 processed_pseudogene Homo_sapiens 0 955
ENST00000594933 ACTBP12-002 processed_transcript Homo_sapiens 0 468
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1375

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