C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000495909 CTD-2061E19.1-001 ENSG00000240388 9606 + 5:91354478-91354934 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000495909
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000495909 0.249±0.00 0.529±0.00 0.103±0.00 0.270±0.00 0.709±0.00 0.030±0.00 0.198±0.00 0.058±0.00 0.286±0.00 0.692±0.00 0.267±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KI CIL_0005KI_0002 CGP 5:90529344-91383359
CIL_0007Q4 CIL_0007Q4_0001 VISTA 5:91172553-91772553
CIL_0008R6 CIL_0008R6_0001 VISTA 5:91189946-91791350
CIL_0008SQ CIL_0008SQ_0001 VISTA 5:91332795-91933409

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120838 Rps18-ps1-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000008812 Rps18-001 protein_coding Mus_musculus 0 468
ENSMUST00000174745 Rps18-011 processed_transcript Mus_musculus 0 462
ENSMUST00000077163 Gm11361-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000074072 Gm10260-201 protein_coding Mus_musculus 0 449
ENSMUST00000080443 Rps18-ps3-201 protein_coding Mus_musculus 0 438
ENSMUST00000174609 Rps18-006 protein_coding Mus_musculus 0 377
ENSMUST00000174620 Rps18-012 retained_intron Mus_musculus 0 372
ENSMUST00000072050 Gm5321-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000172799 Rps18-002 processed_transcript Mus_musculus 0 355
ENSMUST00000174758 Rps18-008 retained_intron Mus_musculus 0 353
ENSMUST00000121730 Gm15696-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000174175 Rps18-005 retained_intron Mus_musculus 0 342

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