C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007SW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1729 VISTA 9606 2:137154939-137756905
GeneTranscriptPositionBiotype
ENSG00000144229 (THSD7B)
thrombospondin, type I, domain containing 7B 		ENST00000272643 (THSD7B-201) 136882179-137677717 protein_coding
ENST00000409968 (THSD7B-001) 136765545-137677717 protein_coding
ENST00000413152 (THSD7B-202) 136990892-137677717 protein_coding
ENST00000472720 (THSD7B-002) 136765545-137056515 nonsense_mediated_decay
ENST00000480352 (THSD7B-004) 137642243-137655640 retained_intron
ENST00000485379 (THSD7B-003) 137155960-137170915 processed_transcript
CIL_0007SW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1729 VISTA 10090 1:129654812-130256885
GeneTranscriptPositionBiotype
ENSMUSG00000042581 (Thsd7b)
thrombospondin, type I, domain containing 7B 		ENSMUST00000040311 (Thsd7b-002) 129273463-130050352 protein_coding
ENSMUST00000073527 (Thsd7b-001) 129273344-130219278 protein_coding
ENSMUST00000140629 (Thsd7b-007) 129273485-129629012 processed_transcript
ENSMUST00000140834 (Thsd7b-008) 130163831-130219276 processed_transcript
ENSMUST00000143130 (Thsd7b-006) 130163846-130165398 processed_transcript
ENSMUST00000148051 (Thsd7b-003) 129273302-129431058 retained_intron
ENSMUST00000151700 (Thsd7b-005) 129915539-130183181 processed_transcript
ENSMUST00000152305 (Thsd7b-004) 129537511-129629046 protein_coding
ENSMUST00000190870 (Thsd7b-009) 129613275-129616043 retained_intron
ENSMUSG00000089648 (Gm15790)
predicted pseudogene 15790 		ENSMUST00000161109 (Gm15790-001) 129796608-129797858 processed_pseudogene
ENSMUSG00000094122 (Rpl31-ps9)
ribosomal protein L31, pseudogene 9 		ENSMUST00000086596 (Rpl31-ps9-001) 129801387-129801764 processed_pseudogene
ENSMUSG00000100623 (RP24-545N23.1)
predicted gene 29428 		ENSMUST00000190086 (RP24-545N23.1-001) 130195980-130196388 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007SW_0001ENSG00000144229ENST00000272643ENST00000409968ENST00000413152ENST00000472720ENST00000480352ENST00000485379CIL_0007SW_0002ENSMUSG00000042581ENSMUST00000040311ENSMUST00000073527ENSMUST00000140629ENSMUST00000140834ENSMUST00000143130ENSMUST00000148051ENSMUST00000151700ENSMUST00000152305ENSMUST00000190870ENSMUSG00000089648ENSMUST00000161109ENSMUSG00000094122ENSMUST00000086596ENSMUSG00000100623ENSMUST00000190086
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007SW_0001ENSG00000144229ENST00000272643ENST00000409968ENST00000413152ENST00000472720ENST00000480352ENST00000485379CIL_0007SW_0002ENSMUSG00000042581ENSMUST00000040311ENSMUST00000073527ENSMUST00000140629ENSMUST00000140834ENSMUST00000148051ENSMUST00000151700ENSMUST00000152305ENSMUST00000190870ENSMUSG00000089648ENSMUST00000161109ENSMUSG00000094122ENSMUST00000086596ENSMUSG00000100623ENSMUST00000190086
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144229 ENST00000272643 N/A 0.111±0.00 N/A 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409968 0.220±0.00 N/A N/A 0.199±0.00 N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A 0.222±0.00
ENST00000413152 N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.037±0.00 0.077±0.07 N/A 0.034±0.03 0.047±0.03 0.060±0.04 N/A
ENST00000472720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.309±0.00
ENST00000480352 N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A 0.195±0.00 N/A N/A N/A
ENST00000485379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042581 ENSMUST00000040311 0.056±0.02 0.068±0.00 0.019±0.00 N/A 0.048±0.00 0.063±0.00 0.030±0.00 0.013±0.00 0.013±0.00 0.017±0.00 N/A N/A 0.032±0.01 N/A
ENSMUST00000073527 0.086±0.03 N/A 0.063±0.02 1.429±0.61 N/A 0.033±0.00 0.031±0.01 0.008±0.00 0.018±0.01 0.049±0.00 0.045±0.01 0.235±0.10 0.003±0.00 N/A
ENSMUST00000140629 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A 0.154±0.00 N/A N/A N/A
ENSMUST00000140834 0.055±0.02 0.145±0.00 N/A N/A 0.072±0.00 0.044±0.00 N/A 0.029±0.01 0.060±0.03 0.024±0.00 0.040±0.01 0.241±0.05 0.011±0.00 6.021±0.81
ENSMUST00000143130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148051 N/A 0.096±0.02 N/A N/A N/A 0.100±0.00 N/A 0.068±0.00 N/A 0.169±0.00 N/A 0.617±0.27 N/A N/A
ENSMUST00000151700 N/A 0.038±0.00 N/A N/A 0.026±0.00 0.028±0.00 N/A N/A 0.023±0.01 0.018±0.00 0.016±0.00 0.205±0.11 0.004±0.00 N/A
ENSMUST00000152305 0.061±0.03 0.119±0.04 0.068±0.00 N/A 0.075±0.07 0.093±0.04 0.073±0.00 0.029±0.02 0.048±0.02 0.079±0.04 0.063±0.02 0.329±0.18 0.020±0.01 N/A
ENSMUST00000190870 0.087±0.01 N/A N/A N/A 0.070±0.03 0.111±0.04 0.018±0.00 0.015±0.00 0.025±0.00 0.060±0.03 0.017±0.00 0.244±0.11 0.013±0.01 N/A
ENSMUSG00000089648 ENSMUST00000161109 0.163±0.00 0.209±0.05 0.051±0.00 0.035±0.00 N/A N/A 0.127±0.00 0.049±0.01 0.043±0.04 N/A N/A 0.197±0.06 0.028±0.00 0.068±0.06
ENSMUSG00000094122 ENSMUST00000086596 0.161±0.00 N/A 146.709±89.28 120.317±37.22 N/A N/A N/A N/A 157.738±196.35 N/A 0.203±0.02 0.614±0.32 0.247±0.09 0.155±0.00
ENSMUSG00000100623 ENSMUST00000190086 N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A 0.023±0.00 N/A N/A 0.116±0.00 N/A 0.303±0.06

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