C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00087Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm663 VISTA 9606 8:67680490-68283275
GeneTranscriptPositionBiotype
ENSG00000046889 (PREX2)
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 		ENST00000288368 (PREX2-001) 67952118-68237030 protein_coding
ENST00000517617 (PREX2-003) 67952489-68111089 processed_transcript
ENST00000520235 (PREX2-004) 68157407-68220350 processed_transcript
ENST00000522247 (PREX2-005) 68157375-68192630 processed_transcript
ENST00000529398 (PREX2-002) 67952368-68106007 processed_transcript
ENSG00000165078 (CPA6)
carboxypeptidase A6 		ENST00000297770 (CPA6-001) 67422173-67746345 protein_coding
ENST00000479862 (CPA6-002) 67422125-67746343 nonsense_mediated_decay
ENST00000518549 (CPA6-003) 67483282-67746343 protein_coding
ENSG00000221660 (AC022861.1)
 ENST00000408733 (AC022861.1-201) 67711632-67711723 miRNA
ENSG00000252210 (Y_RNA)
Y RNA 		ENST00000516401 (Y_RNA.1-881) 68223318-68223402 misc_RNA
ENSG00000254051 (RP11-403D15.1)
 ENST00000518911 (RP11-403D15.1-001) 68176768-68177221 processed_pseudogene
ENSG00000255130 (RP11-396J6.1)
 ENST00000526382 (RP11-396J6.1-001) 67732587-67735665 antisense
ENSG00000255206 (RP11-403D15.2)
 ENST00000526901 (RP11-403D15.2-001) 68082204-68095081 antisense
ENSG00000255531 (NDUFS5P6)
NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 6 		ENST00000529136 (NDUFS5P6-001) 67849044-67849338 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00087Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm663 VISTA 10090 1:10726040-11328544
GeneTranscriptPositionBiotype
ENSMUSG00000048960 (Prex2)
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 		ENSMUST00000027056 (Prex2-001) 10993465-11303681 protein_coding
ENSMUST00000187694 (Prex2-004) 11140691-11160596 retained_intron
ENSMUST00000187745 (Prex2-008) 11258106-11298005 nonsense_mediated_decay
ENSMUST00000188154 (Prex2-006) 11283993-11298204 nonsense_mediated_decay
ENSMUST00000188189 (Prex2-007) 11258067-11297898 nonsense_mediated_decay
ENSMUST00000189385 (Prex2-005) 11263963-11299594 nonsense_mediated_decay
ENSMUST00000189822 (Prex2-003) 11098530-11150071 retained_intron
ENSMUST00000190935 (Prex2-002) 10993518-10996601 retained_intron
ENSMUSG00000100212 (RP24-88A10.1)
predicted gene 5522 		ENSMUST00000189483 (RP24-88A10.1-001) 10805281-10806522 processed_pseudogene
ENSMUSG00000100648 (RP24-467J24.1)
predicted gene 28659 		ENSMUST00000188013 (RP24-467J24.1-001) 10868688-10869446 processed_pseudogene
ENSMUSG00000101827 (RP24-427A3.1)
predicted gene 28686 		ENSMUST00000187404 (RP24-427A3.1-001) 11223566-11224174 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00087Z_0001ENSG00000046889ENST00000288368ENST00000517617ENST00000520235ENST00000522247ENST00000529398ENSG00000165078ENST00000297770ENST00000479862ENST00000518549ENSG00000221660ENST00000408733ENSG00000252210ENST00000516401ENSG00000254051ENST00000518911ENSG00000255130ENST00000526382ENSG00000255206ENST00000526901ENSG00000255531ENST00000529136CIL_00087Z_0002ENSMUSG00000048960ENSMUST00000027056ENSMUST00000187694ENSMUST00000187745ENSMUST00000188154ENSMUST00000188189ENSMUST00000189385ENSMUST00000189822ENSMUST00000190935ENSMUSG00000100212ENSMUST00000189483ENSMUSG00000100648ENSMUST00000188013ENSMUSG00000101827ENSMUST00000187404
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00087Z_0001ENSG00000046889ENST00000288368ENST00000517617ENST00000529398ENSG00000165078ENST00000297770ENST00000479862ENST00000518549ENSG00000221660ENST00000408733ENSG00000252210ENST00000516401ENSG00000254051ENST00000518911ENSG00000255130ENST00000526382ENSG00000255206ENST00000526901ENSG00000255531ENST00000529136CIL_00087Z_0002ENSMUSG00000048960ENSMUST00000027056ENSMUST00000187694ENSMUST00000188189ENSMUST00000189822ENSMUSG00000100212ENSMUST00000189483ENSMUSG00000100648ENSMUST00000188013ENSMUSG00000101827ENSMUST00000187404
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000046889 ENST00000288368 3.133±0.00 0.773±0.00 0.183±0.00 2.676±0.15 3.204±0.00 1.373±0.58 1.419±0.55 0.585±0.48 1.472±1.13 1.368±0.22 0.292±0.19 0.427±0.16 1.210±0.24 1.275±0.83
ENST00000517617 N/A N/A N/A N/A N/A N/A 0.577±0.00 0.184±0.00 N/A 1.046±0.00 N/A N/A N/A N/A
ENST00000520235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529398 N/A N/A 0.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00 N/A N/A
ENSG00000165078 ENST00000297770 N/A 0.039±0.00 N/A 0.007±0.00 N/A 0.712±0.00 N/A N/A N/A N/A N/A 0.047±0.00 N/A 0.405±0.00
ENST00000479862 0.024±0.00 N/A N/A N/A 0.036±0.03 0.225±0.00 N/A 0.029±0.00 N/A 0.282±0.00 N/A 0.020±0.00 0.058±0.03 N/A
ENST00000518549 N/A N/A N/A N/A 0.044±0.00 N/A N/A 0.055±0.00 N/A N/A N/A N/A 0.123±0.00 N/A
ENSG00000221660 ENST00000408733 N/A N/A N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252210 ENST00000516401 N/A N/A N/A 2.422±0.00 0.777±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254051 ENST00000518911 N/A N/A N/A 0.537±0.00 N/A N/A N/A N/A N/A 0.531±0.00 N/A 0.087±0.00 N/A N/A
ENSG00000255130 ENST00000526382 N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A 0.283±0.00 N/A N/A N/A N/A
ENSG00000255206 ENST00000526901 0.045±0.00 N/A N/A 0.060±0.00 0.427±0.00 0.063±0.00 0.247±0.22 N/A N/A 1.812±0.00 0.074±0.00 N/A N/A 0.585±0.23
ENSG00000255531 ENST00000529136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000048960 ENSMUST00000027056 4.083±1.18 0.912±0.39 3.547±0.28 1.001±0.68 2.085±0.26 0.839±0.21 2.089±0.62 1.742±0.48 0.372±0.12 23.845±1.81 0.259±0.06 0.835±0.28 2.331±1.14 0.079±0.03
ENSMUST00000187694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00
ENSMUST00000187745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188189 N/A 3.733±0.20 N/A N/A 4.221±0.50 2.524±0.00 N/A 3.751±0.58 1.397±0.30 N/A N/A 4.602±1.18 N/A 0.836±0.28
ENSMUST00000189385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.182±0.00
ENSMUST00000190935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100212 ENSMUST00000189483 0.186±0.18 0.049±0.00 0.036±0.02 0.081±0.01 0.071±0.02 0.079±0.02 0.409±0.29 0.020±0.00 0.025±0.00 0.063±0.00 N/A 0.123±0.05 0.031±0.02 0.043±0.02
ENSMUSG00000100648 ENSMUST00000188013 0.052±0.00 0.180±0.00 N/A N/A N/A 0.093±0.00 N/A 0.055±0.00 0.014±0.00 0.107±0.05 N/A 0.231±0.00 0.182±0.16 0.179±0.13
ENSMUSG00000101827 ENSMUST00000187404 N/A N/A N/A 0.079±0.01 0.167±0.00 N/A N/A 0.067±0.00 0.201±0.00 0.613±0.20 N/A N/A 0.064±0.00 N/A

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