C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 28659
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188013 RP24-467J24.1-001 ENSMUSG00000100648 10090 + 1:10868688-10869446 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000188013
Transcript ID Adipose Adrenal Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000188013 0.052±0.00 0.180±0.00 0.093±0.00 0.055±0.00 0.014±0.00 0.107±0.05 0.231±0.00 0.182±0.16 0.179±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BU CIL_0005BU_0003 CGP 1:10324720-11303681
CIL_00087Z CIL_00087Z_0002 VISTA 1:10726040-11328544

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393351 RP5-1106E3.1-001 processed_pseudogene Homo_sapiens 0 309
ENST00000428058 CTD-2666L21.2-001 processed_pseudogene Homo_sapiens 0 335
ENST00000434010 RPS2P1-001 processed_pseudogene Homo_sapiens 0 337
ENST00000436136 RP11-16L9.1-001 processed_pseudogene Homo_sapiens 0 309
ENST00000457299 AC087163.2-001 processed_pseudogene Homo_sapiens 0 272
ENST00000479476 RPS2P6-001 processed_pseudogene Homo_sapiens 0 255
ENST00000491725 RP11-810P12.1-001 processed_pseudogene Homo_sapiens 0 274
ENST00000492365 KB-1683C8.1-001 processed_pseudogene Homo_sapiens 0 300
ENST00000612648 CTB-75G16.1-001 processed_pseudogene Homo_sapiens 0 324

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