C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00088F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm33 VISTA 9606 18:76223999-76826442
GeneTranscriptPositionBiotype
ENSG00000101493 (ZNF516)
zinc finger protein 516 		ENST00000443185 (ZNF516-001) 76358190-76495190 protein_coding
ENST00000532857 (ZNF516-002) 76442829-76490779 protein_coding
ENST00000542818 (ZNF516-005) 76362271-76378913 protein_coding
ENST00000543743 (ZNF516-006) 76358197-76359565 processed_transcript
ENST00000617840 (ZNF516-003) 76361768-76380285 protein_coding
ENSG00000130856 (ZNF236)
zinc finger protein 236 		ENST00000253159 (ZNF236-001) 76824160-76970727 protein_coding
ENST00000320610 (ZNF236-002) 76822607-76969918 protein_coding
ENST00000543926 (ZNF236-003) 76824160-76970727 nonsense_mediated_decay
ENST00000579322 (ZNF236-004) 76849199-76881482 protein_coding
ENST00000583095 (ZNF236-005) 76851773-76875516 processed_transcript
ENST00000583488 (ZNF236-008) 76880282-76895377 retained_intron
ENST00000584565 (ZNF236-006) 76898092-76899123 processed_transcript
ENSG00000252097 (RNU6-346P)
RNA, U6 small nuclear 346, pseudogene 		ENST00000516288 (RNU6-346P-201) 76800664-76800774 snRNA
ENSG00000263812 (LINC00908)
long intergenic non-protein coding RNA 908 		ENST00000578092 (LINC00908-002) 76528655-76558220 lincRNA
ENST00000578613 (LINC00908-001) 76528655-76559826 lincRNA
ENST00000582452 (LINC00908-005) 76528917-76562213 lincRNA
ENST00000583578 (LINC00908-003) 76528720-76610968 lincRNA
ENST00000584120 (LINC00908-006) 76543587-76558592 lincRNA
ENST00000584910 (LINC00908-004) 76528824-76602885 lincRNA
ENSG00000263982 (RP11-504I13.3)
 ENST00000583287 (RP11-504I13.3-001) 76372717-76378275 antisense
ENSG00000264212 (RP11-94B19.3)
 ENST00000579833 (RP11-94B19.3-001) 76256891-76258337 lincRNA
ENSG00000264278 (RP11-162A12.2)
 ENST00000585258 (RP11-162A12.2-001) 76794732-76822295 lincRNA
ENSG00000264595 (RP11-94B19.5)
 ENST00000582755 (RP11-94B19.5-001) 76227990-76233387 lincRNA
ENSG00000265626 (AC139085.2)
 ENST00000582716 (AC139085.2-001) 76759685-76759866 processed_pseudogene
ENSG00000265717 (RP11-94B19.7)
 ENST00000579714 (RP11-94B19.7-001) 76254292-76255214 lincRNA
ENSG00000265778 (RP11-17M16.2)
 ENST00000581996 (RP11-17M16.2-001) 76491652-76493918 antisense
ENST00000613453 (RP11-17M16.2-002) 76492564-76492889 antisense
ENSG00000265934 (ARL2BPP1)
ADP-ribosylation factor-like 2 binding protein pseudogene 1 		ENST00000584870 (ARL2BPP1-001) 76703444-76704254 processed_pseudogene
ENSG00000266014 (RP11-94B19.2)
 ENST00000577258 (RP11-94B19.2-001) 76247725-76251388 lincRNA
ENSG00000266256 (LINC00683)
long intergenic non-protein coding RNA 683 		ENST00000578803 (LINC00683-002) 76619777-76623559 lincRNA
ENST00000579781 (LINC00683-001) 76615212-76625940 lincRNA
ENSG00000266312 (RP11-111H3.3)
 ENST00000582231 (RP11-111H3.3-001) 76623006-76639011 lincRNA
ENSG00000266614 (RP11-94B19.4)
 ENST00000577797 (RP11-94B19.4-001) 76259166-76260114 lincRNA
ENSG00000275763 (FLJ44313)
chromosome 18 open reading frame 65 		ENST00000618178 (FLJ44313-201) 76495521-76498088 protein_coding
ENST00000622985 (FLJ44313-001) 76495521-76498088 lincRNA
ENSG00000276397 (AC034110.1)
 ENST00000611889 (AC034110.1-001) 76690029-76693636 lincRNA
ENST00000616078 (AC034110.1-201) 76690089-76691543 lincRNA
ENSG00000278107 (RP11-162A12.4)
 ENST00000622010 (RP11-162A12.4-001) 76805151-76805736 lincRNA
ENSG00000280205 (RP11-504I13.2)
 ENST00000624840 (RP11-504I13.2-001) 76385642-76389406 TEC

Homo sapiens Ensembl (GRCh38)

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Transcripts
Structures from Ensembl
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CIL_00088F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm33 VISTA 10090 18:82587629-83190860
GeneTranscriptPositionBiotype
ENSMUSG00000041258 (Zfp236)
zinc finger protein 236 		ENSMUST00000171071 (Zfp236-002) 82593593-82692883 protein_coding
ENSMUST00000182122 (Zfp236-001) 82597155-82692734 protein_coding
ENSMUST00000182759 (Zfp236-006) 82639034-82640217 retained_intron
ENSMUST00000182866 (Zfp236-005) 82680712-82691799 protein_coding
ENSMUST00000183048 (Zfp236-003) 82597155-82692734 nonsense_mediated_decay
ENSMUST00000183324 (Zfp236-004) 82595476-82617750 nonsense_mediated_decay
ENSMUSG00000058881 (Zfp516)
zinc finger protein 516 		ENSMUST00000071233 (Zfp516-201) 82914632-83005314 protein_coding
ENSMUST00000171238 (Zfp516-202) 82910879-83005314 protein_coding
ENSMUSG00000097141 (Gm10524)
predicted gene 10524 		ENSMUST00000181931 (Gm10524-201) 82692949-82706174 lincRNA
ENSMUSG00000097738 (4930445N18Rik)
RIKEN cDNA 4930445N18 gene 		ENSMUST00000180631 (4930445N18Rik-201) 82855897-82859162 lincRNA
ENSMUST00000181345 (4930445N18Rik-202) 82855894-82870604 lincRNA
ENSMUSG00000100430 (RP23-450K16.1)
RIKEN cDNA 1700095A13 gene 		ENSMUST00000185460 (RP23-450K16.1-001) 83106528-83107860 lincRNA
ENSMUSG00000101773 (RP23-321L15.1)
RIKEN cDNA 2210420H20 gene 		ENSMUST00000188435 (RP23-321L15.1-001) 82754505-82759041 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00088F_0001ENSG00000101493ENST00000443185ENST00000532857ENST00000542818ENST00000543743ENST00000617840ENSG00000130856ENST00000253159ENST00000320610ENST00000543926ENST00000579322ENST00000583095ENST00000583488ENST00000584565ENSG00000252097ENST00000516288ENSG00000263812ENST00000578092ENST00000578613ENST00000582452ENST00000583578ENST00000584120ENST00000584910ENSG00000263982ENST00000583287ENSG00000264212ENST00000579833ENSG00000264278ENST00000585258ENSG00000264595ENST00000582755ENSG00000265626ENST00000582716ENSG00000265717ENST00000579714ENSG00000265778ENST00000581996ENST00000613453ENSG00000265934ENST00000584870ENSG00000266014ENST00000577258ENSG00000266256ENST00000578803ENST00000579781ENSG00000266312ENST00000582231ENSG00000266614ENST00000577797ENSG00000275763ENST00000618178ENST00000622985ENSG00000276397ENST00000611889ENST00000616078ENSG00000278107ENST00000622010ENSG00000280205ENST00000624840CIL_00088F_0002ENSMUSG00000041258ENSMUST00000171071ENSMUST00000182122ENSMUST00000182759ENSMUST00000182866ENSMUST00000183048ENSMUST00000183324ENSMUSG00000058881ENSMUST00000071233ENSMUST00000171238ENSMUSG00000097141ENSMUST00000181931ENSMUSG00000097738ENSMUST00000180631ENSMUST00000181345ENSMUSG00000100430ENSMUST00000185460ENSMUSG00000101773ENSMUST00000188435
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101493 ENST00000443185 3.151±0.00 1.233±0.00 N/A N/A N/A 1.157±0.00 0.374±0.00 1.084±0.23 2.759±0.00 0.462±0.00 0.517±0.20 4.357±2.84 2.166±1.01 10.533±2.63
ENST00000532857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617840 N/A N/A N/A N/A N/A N/A 0.965±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000130856 ENST00000253159 N/A N/A N/A 0.501±0.34 N/A 0.567±0.00 N/A N/A N/A 0.821±0.00 0.302±0.00 0.409±0.00 N/A 2.094±0.00
ENST00000320610 0.575±0.00 0.453±0.00 N/A 0.409±0.23 0.525±0.08 0.439±0.00 0.272±0.04 0.866±0.00 1.252±0.00 0.357±0.00 0.402±0.05 0.864±0.22 0.498±0.34 3.284±1.44
ENST00000543926 N/A N/A N/A N/A N/A N/A N/A 0.266±0.00 N/A N/A N/A N/A 0.328±0.00 1.096±0.00
ENST00000579322 N/A N/A N/A 4.283±0.00 N/A N/A N/A N/A N/A N/A N/A 3.934±0.00 N/A N/A
ENST00000583095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.966±0.00 N/A N/A N/A
ENST00000583488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.366±0.00 N/A
ENST00000584565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252097 ENST00000516288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.464±0.00
ENSG00000263812 ENST00000578092 N/A N/A 0.167±0.00 N/A N/A N/A N/A N/A N/A 0.721±0.00 N/A 0.913±0.00 0.313±0.00 N/A
ENST00000578613 N/A 0.539±0.00 N/A 0.169±0.00 N/A N/A 0.111±0.00 0.246±0.00 0.062±0.00 0.424±0.28 N/A 1.112±0.73 0.065±0.00 N/A
ENST00000582452 N/A 0.544±0.00 0.127±0.00 0.298±0.21 0.628±0.00 0.302±0.00 0.450±0.00 1.675±0.00 0.443±0.23 N/A 0.081±0.00 0.786±0.00 0.185±0.00 1.987±0.00
ENST00000583578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 0.983±0.00
ENST00000584120 N/A N/A 0.279±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.796±0.00 0.098±0.03 N/A
ENST00000584910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000263982 ENST00000583287 0.071±0.00 0.071±0.00 0.474±0.00 N/A 0.035±0.00 0.392±0.00 0.133±0.00 0.071±0.00 N/A 0.384±0.17 N/A 0.167±0.00 N/A 0.189±0.10
ENSG00000264212 ENST00000579833 N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 0.188±0.02
ENSG00000264278 ENST00000585258 1.022±0.00 1.232±0.00 N/A 0.279±0.00 0.099±0.00 0.259±0.00 0.243±0.00 0.379±0.00 0.309±0.00 0.201±0.00 0.215±0.00 0.163±0.10 0.220±0.05 0.435±0.15
ENSG00000264595 ENST00000582755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.116±0.03 0.330±0.00
ENSG00000265626 ENST00000582716 N/A N/A N/A N/A N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000265717 ENST00000579714 N/A N/A N/A 0.126±0.00 N/A N/A 0.155±0.00 N/A N/A N/A N/A 0.209±0.02 0.503±0.00 0.395±0.05
ENSG00000265778 ENST00000581996 0.134±0.00 0.264±0.00 0.480±0.00 0.125±0.02 0.221±0.04 0.584±0.30 0.175±0.00 0.293±0.00 0.185±0.03 0.192±0.01 0.023±0.00 0.684±0.52 0.113±0.07 0.788±0.00
ENST00000613453 0.172±0.00 N/A N/A 1.505±0.99 2.186±0.00 N/A 0.526±0.00 0.485±0.00 2.249±0.00 0.264±0.00 N/A 2.039±0.22 N/A 4.843±3.91
ENSG00000265934 ENST00000584870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00
ENSG00000266014 ENST00000577258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A 0.348±0.16
ENSG00000266256 ENST00000578803 N/A N/A 0.074±0.00 N/A N/A N/A N/A 0.270±0.11 0.042±0.00 N/A N/A 0.062±0.00 0.046±0.02 0.659±0.01
ENST00000579781 0.036±0.00 0.065±0.00 N/A 0.104±0.01 0.052±0.00 0.016±0.00 0.010±0.00 0.012±0.00 0.029±0.00 0.034±0.00 N/A 0.052±0.00 0.010±0.00 0.247±0.09
ENSG00000266312 ENST00000582231 N/A 0.124±0.00 N/A N/A 0.043±0.00 N/A N/A N/A 0.038±0.00 0.347±0.00 N/A 0.165±0.00 0.050±0.00 4.570±0.00
ENSG00000266614 ENST00000577797 N/A N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A N/A 0.113±0.00 N/A 0.499±0.31
ENSG00000275763 ENST00000618178 0.107±0.00 0.157±0.00 N/A 0.277±0.01 0.017±0.00 0.055±0.00 0.081±0.00 0.101±0.05 0.106±0.01 0.010±0.00 N/A 0.132±0.06 0.085±0.00 0.272±0.02
ENST00000622985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276397 ENST00000611889 N/A N/A N/A 0.028±0.01 N/A N/A N/A N/A N/A 0.019±0.00 N/A N/A 0.030±0.01 0.023±0.00
ENST00000616078 N/A 0.089±0.00 N/A 0.014±0.00 0.069±0.00 0.009±0.00 N/A 0.010±0.00 N/A N/A 0.008±0.00 0.010±0.00 N/A 0.059±0.00
ENSG00000278107 ENST00000622010 1.001±0.00 2.041±0.00 0.330±0.00 0.631±0.51 1.604±0.00 0.756±0.00 1.061±0.00 0.857±0.00 0.200±0.00 0.223±0.00 1.226±0.00 1.141±0.90 0.337±0.09 1.029±0.00
ENSG00000280205 ENST00000624840 N/A N/A 0.681±0.00 0.031±0.01 0.062±0.00 0.047±0.04 0.024±0.00 N/A 0.162±0.12 0.100±0.07 N/A 0.099±0.11 N/A 0.050±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041258 ENSMUST00000171071 4.555±0.00 0.829±0.03 0.781±0.00 2.932±1.19 3.263±0.50 N/A 0.590±0.00 1.078±0.44 1.209±0.58 0.991±0.00 N/A 1.580±0.70 0.361±0.00 1.760±0.19
ENSMUST00000182122 3.347±1.69 3.876±1.33 2.659±0.00 2.590±0.64 4.710±1.61 3.529±0.70 1.192±0.33 2.023±1.07 1.651±0.80 3.665±1.11 0.742±0.34 6.245±1.77 3.158±1.49 5.163±1.44
ENSMUST00000182759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183324 1.545±0.00 3.108±0.00 2.311±0.00 N/A N/A 3.116±0.64 N/A 2.147±0.00 1.488±0.40 N/A 0.611±0.00 4.099±0.56 2.061±0.65 3.448±0.27
ENSMUSG00000058881 ENSMUST00000071233 2.859±0.52 2.256±0.60 2.573±0.18 2.023±0.16 1.946±0.70 1.501±0.70 1.303±0.29 1.649±0.17 0.859±0.33 4.677±0.28 1.774±0.45 7.631±2.80 2.519±1.07 2.006±0.72
ENSMUST00000171238 5.708±3.31 4.319±0.66 3.003±0.41 2.167±0.37 2.395±1.05 2.083±0.73 0.522±0.00 0.851±0.47 0.474±0.30 1.784±0.29 0.484±0.13 9.457±4.01 0.879±0.47 0.970±0.07
ENSMUSG00000097141 ENSMUST00000181931 1.855±0.30 5.633±1.57 0.319±0.04 1.340±0.32 0.980±0.49 1.276±0.40 0.671±0.33 1.360±0.10 0.541±0.16 1.047±0.58 4.043±0.06 1.669±0.59 0.302±0.25 2.544±1.59
ENSMUSG00000097738 ENSMUST00000180631 0.112±0.06 N/A 0.078±0.00 0.010±0.00 0.116±0.00 N/A N/A N/A 0.044±0.03 N/A 0.109±0.06 0.096±0.08 0.063±0.05 0.187±0.04
ENSMUST00000181345 0.081±0.01 0.079±0.00 0.051±0.01 0.036±0.03 0.120±0.00 N/A N/A N/A 0.035±0.02 0.042±0.00 0.073±0.03 0.078±0.06 0.033±0.01 0.084±0.05
ENSMUSG00000100430 ENSMUST00000185460 N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A 0.044±0.01 N/A 3.484±1.55
ENSMUSG00000101773 ENSMUST00000188435 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.03 N/A N/A N/A 0.066±0.00

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