C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 18025
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166546 Gm18025-201 ENSMUSG00000095406 10090 - 12:34290274-34291092 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000166546
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000166546 0.047±0.01 0.105±0.03 0.066±0.04 0.118±0.08 0.169±0.07 0.080±0.00 0.067±0.02 0.100±0.03 0.058±0.04 0.054±0.01 0.091±0.01 0.147±0.11 0.057±0.04 0.043±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LO CIL_0007LO_0002 UCNEbase 12:33675251-34394390
CIL_0008A9 CIL_0008A9_0002 VISTA 12:33899630-34500876
CIL_0008Z7 CIL_0008Z7_0002 VISTA 12:33915261-34516362
CIL_0008Z6 CIL_0008Z6_0002 VISTA 12:33919670-34521315

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314255 RPS2P28-001 processed_pseudogene Homo_sapiens 0 689
ENST00000343262 RPS2-001 protein_coding Homo_sapiens 0 830
ENST00000393351 RP5-1106E3.1-001 processed_pseudogene Homo_sapiens 0 719
ENST00000397318 RPS2P55-001 processed_pseudogene Homo_sapiens 0 808
ENST00000402069 RP3-337H4.6-001 processed_pseudogene Homo_sapiens 0 854
ENST00000423464 RP11-183G22.1-001 processed_pseudogene Homo_sapiens 0 760
ENST00000428058 CTD-2666L21.2-001 processed_pseudogene Homo_sapiens 0 743
ENST00000433054 RP11-1O7.1-001 processed_pseudogene Homo_sapiens 0 691
ENST00000434010 RPS2P1-001 processed_pseudogene Homo_sapiens 0 704
ENST00000436136 RP11-16L9.1-001 processed_pseudogene Homo_sapiens 0 614
ENST00000438210 RP3-342P20.2-001 processed_pseudogene Homo_sapiens 0 736
ENST00000441047 RPS2P48-001 processed_pseudogene Homo_sapiens 0 785
ENST00000442812 RP11-377K22.2-001 processed_pseudogene Homo_sapiens 8.99999e-40 165
ENST00000443417 RPS2P35-001 processed_pseudogene Homo_sapiens 0 745
ENST00000447422 RP11-109P14.8-001 processed_pseudogene Homo_sapiens 0 523
ENST00000449856 AC022210.2-001 processed_pseudogene Homo_sapiens 0 828
ENST00000457299 AC087163.2-001 processed_pseudogene Homo_sapiens 0 610
ENST00000459634 RP11-192C21.1-001 processed_pseudogene Homo_sapiens 0 652
ENST00000468126 RP11-324J13.1-001 processed_pseudogene Homo_sapiens 0 721
ENST00000474589 RP11-713P14.1-001 processed_pseudogene Homo_sapiens 0 595
ENST00000478038 RPS2P44-001 processed_pseudogene Homo_sapiens 0 584
ENST00000479476 RPS2P6-001 processed_pseudogene Homo_sapiens 0 664
ENST00000480705 RP11-296A18.5-001 processed_pseudogene Homo_sapiens 0 802
ENST00000488803 RPS2P5-001 processed_pseudogene Homo_sapiens 0 832
ENST00000491725 RP11-810P12.1-001 processed_pseudogene Homo_sapiens 0 582
ENST00000492365 KB-1683C8.1-001 processed_pseudogene Homo_sapiens 0 712
ENST00000526522 RPS2-006 protein_coding Homo_sapiens 0 399
ENST00000526586 RPS2-015 protein_coding Homo_sapiens 0 215
ENST00000527109 RPS2-005 retained_intron Homo_sapiens 0 396
ENST00000527871 RPS2-004 retained_intron Homo_sapiens 0 396
ENST00000529806 RPS2-008 protein_coding Homo_sapiens 0 667
ENST00000530225 RPS2-017 protein_coding Homo_sapiens 0 215
ENST00000531065 RPS2-003 retained_intron Homo_sapiens 0 689
ENST00000532746 RPS2-012 nonsense_mediated_decay Homo_sapiens 0 689
ENST00000533161 RPS2-002 retained_intron Homo_sapiens 0 396
ENST00000533186 RPS2-013 protein_coding Homo_sapiens 0 575
ENST00000533872 RPS2-011 retained_intron Homo_sapiens 0 573
ENST00000554490 RPS2P2-001 processed_pseudogene Homo_sapiens 0 608
ENST00000610837 RP11-19G24.1-001 processed_pseudogene Homo_sapiens 0 640
ENST00000612648 CTB-75G16.1-001 processed_pseudogene Homo_sapiens 0 712

Loading