C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeo box B4a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000012470 hoxb4a-001 ENSDARG00000013533 7955 + 3:24013049-24015223 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000012470
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000012470 0.388±0.00 0.370±0.27 0.555±0.00 0.033±0.00 0.151±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DH CIL_0004DH_0001 CGP 3:23998932-24015223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000704 Hoxb6-201 protein_coding Mus_musculus 0.00000000000003 84
ENSMUST00000049352 Hoxb7-001 protein_coding Mus_musculus 1e-17 95
ENSMUST00000173432 Hoxb6-001 protein_coding Mus_musculus 0.00000000000005 84
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 3e-21 108
ENST00000239165 HOXB7-001 protein_coding Homo_sapiens 1e-17 95
ENST00000467314 HOXB7-003 processed_transcript Homo_sapiens 5e-18 95
ENST00000567101 HOXB7-008 processed_transcript Homo_sapiens 5e-18 95

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