C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049352 Hoxb7-001 ENSMUSG00000038721 10090 + 11:96286623-96290162 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049352
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049352 4.455±2.09 30.251±7.69 4.514±0.61 0.371±0.33 2.772±1.00 2.682±1.12 0.074±0.00 11.484±1.01 0.088±0.05 0.642±0.25 0.733±0.22 5.079±1.46 0.608±0.38 1.204±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_0004GM CIL_0004GM_0002 CGP 11:96281905-96290162

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0030099 IMP myeloid cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0090190 IMP positive regulation of branching involved in ureteric bud morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000012470 hoxb4a-001 protein_coding Danio_rerio 1e-17 95
ENSDART00000151584 hoxb4a-002 protein_coding Danio_rerio 1e-17 95
ENST00000222726 HOXA5-001 protein_coding Homo_sapiens 2e-26 124
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 0 220
ENST00000239165 HOXB7-001 protein_coding Homo_sapiens 0 1175
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 0 228
ENST00000467314 HOXB7-003 processed_transcript Homo_sapiens 0 405
ENST00000520854 HOXA5-002 processed_transcript Homo_sapiens 4e-27 124
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 0 220
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 0 200
ENST00000567101 HOXB7-008 processed_transcript Homo_sapiens 0 403

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