C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type VIII, alpha a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000022042 scn8aa-001 ENSDARG00000005775 7955 - 23:27492263-27586062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000022042
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000022042 6.690±0.00 0.007±0.00 0.177±0.10 0.033±0.00 1.452±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005248 IEA voltage-gated sodium channel activity
GO:0005272 IEA sodium channel activity
GO:0005887 IC integral to plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0007638 IMP mechanosensory behavior
GO:0008045 IMP motor neuron axon guidance
GO:0008345 IMP larval locomotory behavior
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IMP regulation of ion transmembrane transport
GO:0035725 IMP sodium ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065196 Scn5a-201 protein_coding Mus_musculus 0 942
ENSMUST00000117911 Scn5a-001 protein_coding Mus_musculus 0 942
ENSMUST00000120420 Scn5a-002 protein_coding Mus_musculus 0 942
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 351
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 435
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 488
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 488
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 435
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 488
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 488
ENST00000424833 SCN2A-003 protein_coding Homo_sapiens 0 435
ENST00000452182 SCN9A-003 protein_coding Homo_sapiens 0 316
ENST00000454569 SCN9A-002 protein_coding Homo_sapiens 0 316
ENST00000480032 SCN2A-005 retained_intron Homo_sapiens 0 435
ENST00000486878 SCN2A-004 retained_intron Homo_sapiens 0 272

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