| Transcript ID | Liver | Lung | Ovary |
|---|---|---|---|
| ENSMUST00000169900 | 0.001±0.00 | 0.003±0.00 | 0.009±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | sodium channel, voltage-gated, type IX, alpha | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000169900  |
Scn9a-203 |
ENSMUSG00000075316 |
10090 | - |
2:66482091-66634653  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0006CK | CIL_0006CK_0002 | CGP | 2:66270781-66634962 |
| CIL_0006CV | CIL_0006CV_0002 | CGP | 2:66480080-66784914 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001518 | IEA | voltage-gated sodium channel complex |
| GO:0005248 | IBA | voltage-gated sodium channel activity |
| GO:0005886 | IBA | plasma membrane |
| GO:0006954 | IMP | inflammatory response |
| GO:0009636 | IDA | response to toxic substance |
| GO:0009791 | IMP | post-embryonic development |
| GO:0019228 | IBA | neuronal action potential |
| GO:0034765 | IEA | regulation of ion transmembrane transport |
| GO:0035725 | IBA | sodium ion transmembrane transport |
| GO:0048266 | IMP | behavioral response to pain |
| GO:0086010 | IBA | membrane depolarization during action potential |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSDART00000083256
|
scn12aa-201 | protein_coding | Danio_rerio | 0 | 760 |
|
ENSDART00000022761
|
scn8ab-201 | protein_coding | Danio_rerio | 0 | 516 |
|
ENSDART00000151299
|
scn8ab-001 | protein_coding | Danio_rerio | 0 | 516 |
|
ENSDART00000090994
|
scn1lab-201 | protein_coding | Danio_rerio | 0 | 466 |
|
ENSDART00000151247
|
scn1lab-001 | protein_coding | Danio_rerio | 0 | 466 |
|
ENSDART00000106534
|
scn4aa-001 | protein_coding | Danio_rerio | 0 | 412 |
|
ENSDART00000022042
|
scn8aa-001 | protein_coding | Danio_rerio | 0 | 351 |
|
ENSDART00000011718
|
scn1a-201 | protein_coding | Danio_rerio | 0 | 340 |
|
ENSDART00000090979
|
scn1a-202 | protein_coding | Danio_rerio | 0 | 340 |
|
ENSDART00000097722
|
SCN11A-201 | protein_coding | Danio_rerio | 0 | 283 |
|
ENST00000283254
|
SCN3A-001 | protein_coding | Homo_sapiens | 0 | 1864 |
|
ENST00000283256
|
SCN2A-001 | protein_coding | Homo_sapiens | 0 | 2865 |
|
ENST00000302328
|
SCN11A-001 | protein_coding | Homo_sapiens | 0 | 244 |
|
ENST00000303354
|
SCN9A-201 | protein_coding | Homo_sapiens | 0 | 4647 |
|
ENST00000303395
|
SCN1A-001 | protein_coding | Homo_sapiens | 0 | 1788 |
|
ENST00000333535
|
SCN5A-014 | protein_coding | Homo_sapiens | 0 | 966 |
|
ENST00000360093
|
SCN3A-201 | protein_coding | Homo_sapiens | 0 | 1864 |
|
ENST00000375405
|
SCN1A-002 | protein_coding | Homo_sapiens | 0 | 1788 |
|
ENST00000375427
|
SCN2A-002 | protein_coding | Homo_sapiens | 0 | 2865 |
|
ENST00000375437
|
SCN2A-201 | protein_coding | Homo_sapiens | 0 | 2865 |
|
ENST00000409050
|
SCN1A-003 | protein_coding | Homo_sapiens | 0 | 1788 |
|
ENST00000409101
|
SCN3A-002 | protein_coding | Homo_sapiens | 0 | 1864 |
|
ENST00000409435
|
SCN9A-004 | protein_coding | Homo_sapiens | 0 | 4484 |
|
ENST00000409672
|
SCN9A-001 | protein_coding | Homo_sapiens | 0 | 6830 |
|
ENST00000409855
|
SCN7A-001 | protein_coding | Homo_sapiens | 0 | 206 |
|
ENST00000413689
|
SCN5A-001 | protein_coding | Homo_sapiens | 0 | 966 |
|
ENST00000414099
|
SCN5A-004 | protein_coding | Homo_sapiens | 0 | 782 |
|
ENST00000423058
|
SCN1A-201 | protein_coding | Homo_sapiens | 0 | 1788 |
|
ENST00000423572
|
SCN5A-003 | protein_coding | Homo_sapiens | 0 | 966 |
|
ENST00000424326
|
SCN7A-003 | nonsense_mediated_decay | Homo_sapiens | 0 | 206 |
|
ENST00000424833
|
SCN2A-003 | protein_coding | Homo_sapiens | 0 | 643 |
|
ENST00000425664
|
SCN5A-201 | protein_coding | Homo_sapiens | 0 | 782 |
|
ENST00000440431
|
SCN3A-004 | protein_coding | Homo_sapiens | 0 | 776 |
|
ENST00000443581
|
SCN5A-202 | protein_coding | Homo_sapiens | 0 | 966 |
|
ENST00000444237
|
SCN11A-002 | protein_coding | Homo_sapiens | 0 | 243 |
|
ENST00000449082
|
SCN10A-001 | protein_coding | Homo_sapiens | 0 | 569 |
|
ENST00000449557
|
SCN5A-010 | protein_coding | Homo_sapiens | 0 | 966 |
|
ENST00000450102
|
SCN5A-008 | protein_coding | Homo_sapiens | 0 | 966 |
|
ENST00000451551
|
SCN5A-203 | protein_coding | Homo_sapiens | 0 | 966 |
|
ENST00000452182
|
SCN9A-003 | protein_coding | Homo_sapiens | 0 | 1749 |
|
ENST00000453007
|
SCN3A-003 | protein_coding | Homo_sapiens | 0 | 337 |
|
ENST00000454569
|
SCN9A-002 | protein_coding | Homo_sapiens | 0 | 1768 |
|
ENST00000455624
|
SCN5A-002 | protein_coding | Homo_sapiens | 0 | 531 |
|
ENST00000456224
|
SCN11A-003 | protein_coding | Homo_sapiens | 0 | 244 |
|
ENST00000473295
|
SCN1A-005 | retained_intron | Homo_sapiens | 0 | 248 |
|
ENST00000480032
|
SCN2A-005 | retained_intron | Homo_sapiens | 0 | 643 |
|
ENST00000486878
|
SCN2A-004 | retained_intron | Homo_sapiens | 0 | 355 |
|
ENST00000507401
|
SCN1A-007 | retained_intron | Homo_sapiens | 7e-28 | 128 |
|
ENST00000550891
|
SCN8A-003 | protein_coding | Homo_sapiens | 0 | 399 |
|
ENST00000551216
|
SCN8A-004 | protein_coding | Homo_sapiens | 0 | 267 |
|
ENST00000619410
|
SCN7A-201 | protein_coding | Homo_sapiens | 0 | 206 |
|
ENST00000621965
|
SCN7A-202 | protein_coding | Homo_sapiens | 0 | 206 |
