C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | sodium channel, voltage-gated, type I, alpha subunit | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000423058  |
SCN1A-201 |
ENSG00000144285 |
9606 | - |
2:165989160-166073697  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0006CL | CIL_0006CL_0001 | CGP | 2:165857475-166128013 |
| CIL_0006CK | CIL_0006CK_0001 | CGP | 2:165989160-166375993 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001518 | IEA | voltage-gated sodium channel complex |
| GO:0005216 | IEA | ion channel activity |
| GO:0005248 | NAS:IEA | voltage-gated sodium channel activity |
| GO:0005886 | IBA | plasma membrane |
| GO:0006811 | IEA | ion transport |
| GO:0006814 | NAS:IEA | sodium ion transport |
| GO:0016020 | IEA | membrane |
| GO:0019228 | IBA | neuronal action potential |
| GO:0030018 | ISS | Z disc |
| GO:0034765 | IEA | regulation of ion transmembrane transport |
| GO:0035725 | IEA | sodium ion transmembrane transport |
| GO:0055085 | IEA | transmembrane transport |
| GO:0086010 | IBA | membrane depolarization during action potential |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000112366
|
Scn1a-001 | protein_coding | Mus_musculus | 0 | 9697 |
|
ENSMUST00000112371
|
Scn1a-201 | protein_coding | Mus_musculus | 0 | 6841 |
|
ENSMUST00000077489
|
Scn1a-004 | protein_coding | Mus_musculus | 0 | 6837 |
|
ENSMUST00000094951
|
Scn1a-005 | protein_coding | Mus_musculus | 0 | 5171 |
|
ENSMUST00000100067
|
Scn2a1-201 | protein_coding | Mus_musculus | 0 | 3304 |
|
ENSMUST00000028377
|
Scn2a1-001 | protein_coding | Mus_musculus | 0 | 3304 |
|
ENSMUST00000066432
|
Scn3a-201 | protein_coding | Mus_musculus | 0 | 2972 |
|
ENSMUST00000100069
|
Scn3a-001 | protein_coding | Mus_musculus | 0 | 2972 |
|
ENSMUST00000156865
|
Scn1a-003 | processed_transcript | Mus_musculus | 0 | 1940 |
|
ENSMUST00000169900
|
Scn9a-203 | protein_coding | Mus_musculus | 0 | 1788 |
|
ENSMUST00000100063
|
Scn9a-201 | protein_coding | Mus_musculus | 0 | 1788 |
|
ENSMUST00000164384
|
Scn9a-202 | protein_coding | Mus_musculus | 0 | 1788 |
|
ENSMUST00000112354
|
Scn9a-002 | protein_coding | Mus_musculus | 0 | 1788 |
|
ENSMUST00000100064
|
Scn9a-001 | protein_coding | Mus_musculus | 0 | 1788 |
|
ENSDART00000022761
|
scn8ab-201 | protein_coding | Danio_rerio | 0 | 976 |
|
ENSDART00000151299
|
scn8ab-001 | protein_coding | Danio_rerio | 0 | 976 |
|
ENSMUST00000021056
|
Scn4a-001 | protein_coding | Mus_musculus | 0 | 859 |
|
ENSMUST00000138910
|
Scn1a-006 | protein_coding | Mus_musculus | 0 | 806 |
|
ENSMUST00000155838
|
Scn3a-003 | processed_transcript | Mus_musculus | 0 | 619 |
|
ENSDART00000090994
|
scn1lab-201 | protein_coding | Danio_rerio | 0 | 514 |
|
ENSDART00000151247
|
scn1lab-001 | protein_coding | Danio_rerio | 0 | 514 |
|
ENSDART00000022042
|
scn8aa-001 | protein_coding | Danio_rerio | 0 | 488 |
|
ENSMUST00000129508
|
Scn1a-002 | processed_transcript | Mus_musculus | 0 | 473 |
|
ENSMUST00000144254
|
Scn2a1-002 | protein_coding | Mus_musculus | 0 | 468 |
|
ENSMUST00000108910
|
Scn8a-205 | protein_coding | Mus_musculus | 0 | 444 |
|
ENSMUST00000108908
|
Scn8a-203 | protein_coding | Mus_musculus | 0 | 414 |
|
ENSMUST00000108909
|
Scn8a-204 | protein_coding | Mus_musculus | 0 | 414 |
|
ENSMUST00000138368
|
Scn2a1-003 | processed_transcript | Mus_musculus | 0 | 292 |
|
ENSMUST00000141603
|
Scn9a-003 | retained_intron | Mus_musculus | 9e-27 | 128 |
