C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type II, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486878 SCN2A-004 ENSG00000136531 9606 + 2:165308666-165310745 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeLungENST00000486878
Transcript ID Adipose Lung
ENST00000486878 0.058±0.00 0.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CO CIL_0006CO_0001 CGP 2:165087522-165392308
CIL_0006CJ CIL_0006CJ_0001 CGP 2:165239402-165689407

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 573
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 573
ENSMUST00000144254 Scn2a1-002 protein_coding Mus_musculus 0 571
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 427
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 427
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 427
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 427
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 372
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 372
ENSMUST00000138368 Scn2a1-003 processed_transcript Mus_musculus 0 366
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 355
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 274
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 274
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 274
ENSDART00000022042 scn8aa-001 protein_coding Danio_rerio 0 272
ENSDART00000097722 SCN11A-201 protein_coding Danio_rerio 0 231

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