C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107150 Hdac5-019 ENSMUSG00000008855 10090 - 11:102195751-102230136 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000107150
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000107150 6.520±0.56 8.010±2.88 5.366±0.13 10.942±1.20 12.294±3.45 9.671±0.98 6.696±1.04 5.366±0.38 2.548±1.05 13.428±2.05 5.343±1.15 8.901±2.55 3.383±1.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0005J5 CIL_0005J5_0002 CGP 11:102189620-102230166
CIL_0005J4 CIL_0005J4_0002 CGP 11:102194432-102265187

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0002076 IMP osteoblast development
GO:0003714 IDA transcription corepressor activity
GO:0004407 IEA histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0007507 IGI heart development
GO:0016575 IEA histone deacetylation
GO:0016604 IDA nuclear body
GO:0033555 IMP multicellular organismal response to stress
GO:0042220 IDA response to cocaine
GO:0045668 IMP negative regulation of osteoblast differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048742 IGI regulation of skeletal muscle fiber development
GO:0051153 IGI regulation of striated muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111435 hdac5-201 protein_coding Danio_rerio 0 355
ENSDART00000157378 hdac5-001 protein_coding Danio_rerio 0 327
ENSDART00000036277 hdac4-201 protein_coding Danio_rerio 4e-22 111
ENSDART00000124870 hdac4-001 protein_coding Danio_rerio 4e-22 111
ENST00000080059 HDAC7-001 protein_coding Homo_sapiens 0 532
ENST00000225983 HDAC5-003 protein_coding Homo_sapiens 0 4987
ENST00000336057 HDAC5-001 protein_coding Homo_sapiens 0 3024
ENST00000354334 HDAC7-002 protein_coding Homo_sapiens 0 532
ENST00000380610 HDAC7-029 protein_coding Homo_sapiens 0 532
ENST00000399687 ABCD1P4-001 unprocessed_pseudogene Homo_sapiens 0.00004 53
ENST00000427332 HDAC7-013 protein_coding Homo_sapiens 0 532
ENST00000459625 HDAC7-007 retained_intron Homo_sapiens 4e-29 135
ENST00000470668 HDAC7-005 retained_intron Homo_sapiens 0 518
ENST00000477203 HDAC7-030 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000477937 HDAC7-026 processed_transcript Homo_sapiens 1e-33 147
ENST00000488927 HDAC7-027 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000548080 HDAC7-031 protein_coding Homo_sapiens 4e-38 163
ENST00000548938 HDAC7-003 nonsense_mediated_decay Homo_sapiens 0 520
ENST00000552960 HDAC7-028 protein_coding Homo_sapiens 0 532
ENST00000586339 HDAC5-013 retained_intron Homo_sapiens 0 335
ENST00000586802 HDAC5-002 protein_coding Homo_sapiens 0 4780
ENST00000587135 HDAC5-008 protein_coding Homo_sapiens 0 211
ENST00000587776 HDAC5-011 retained_intron Homo_sapiens 0 791
ENST00000588261 HDAC5-010 protein_coding Homo_sapiens 0 870
ENST00000588419 HDAC5-012 retained_intron Homo_sapiens 0 959
ENST00000588703 HDAC5-007 protein_coding Homo_sapiens 0 335
ENST00000592385 HDAC5-004 retained_intron Homo_sapiens 0 2049
ENST00000593013 HDAC5-005 retained_intron Homo_sapiens 0 782

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