C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107151 Hdac5-003 ENSMUSG00000008855 10090 - 11:102194432-102230166 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000107151
Transcript ID Testis
ENSMUST00000107151 0.278±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0005J5 CIL_0005J5_0002 CGP 11:102189620-102230166
CIL_0005J4 CIL_0005J4_0002 CGP 11:102194432-102265187

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0002076 IMP osteoblast development
GO:0003714 IDA transcription corepressor activity
GO:0004407 IEA histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0007507 IGI heart development
GO:0016575 IEA histone deacetylation
GO:0016604 IDA nuclear body
GO:0033555 IMP multicellular organismal response to stress
GO:0042220 IDA response to cocaine
GO:0045668 IMP negative regulation of osteoblast differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048742 IGI regulation of skeletal muscle fiber development
GO:0051153 IGI regulation of striated muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111435 hdac5-201 protein_coding Danio_rerio 0 355
ENSDART00000157378 hdac5-001 protein_coding Danio_rerio 0 327
ENSDART00000036277 hdac4-201 protein_coding Danio_rerio 5e-22 111
ENSDART00000124870 hdac4-001 protein_coding Danio_rerio 5e-22 111
ENST00000225983 HDAC5-003 protein_coding Homo_sapiens 0 3066
ENST00000336057 HDAC5-001 protein_coding Homo_sapiens 0 4706
ENST00000399687 ABCD1P4-001 unprocessed_pseudogene Homo_sapiens 0.00004 53
ENST00000586339 HDAC5-013 retained_intron Homo_sapiens 0 335
ENST00000586802 HDAC5-002 protein_coding Homo_sapiens 0 2822
ENST00000587135 HDAC5-008 protein_coding Homo_sapiens 0 211
ENST00000587776 HDAC5-011 retained_intron Homo_sapiens 0 791
ENST00000588261 HDAC5-010 protein_coding Homo_sapiens 0 870
ENST00000588419 HDAC5-012 retained_intron Homo_sapiens 0 451
ENST00000588703 HDAC5-007 protein_coding Homo_sapiens 0 344
ENST00000592385 HDAC5-004 retained_intron Homo_sapiens 0 1275
ENST00000593013 HDAC5-005 retained_intron Homo_sapiens 0 451

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