C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox protein 3a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000074895 irx3a-201 ENSDARG00000052947 7955 - 7:35811114-35814431 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000074895
Transcript ID Brain Heart Kidney Muscle
ENSDART00000074895 8.864±3.66 1.098±0.59 1.479±0.74 0.605±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00017Z CIL_00017Z_0001 CGP 7:35660425-35851568

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 1.4013e-45 189
ENST00000231357 IRX4-001 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 1.4013e-45 189
ENST00000320990 IRX5-002 protein_coding Homo_sapiens 2e-38 165
ENST00000329734 IRX3-001 protein_coding Homo_sapiens 0 265
ENST00000394636 IRX5-001 protein_coding Homo_sapiens 2e-38 165
ENST00000505790 IRX4-004 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000505938 IRX4-006 processed_transcript Homo_sapiens 4.06377e-44 182
ENST00000508261 IRX4-002 nonsense_mediated_decay Homo_sapiens 9.94922e-44 182
ENST00000511126 IRX4-005 protein_coding Homo_sapiens 2e-28 130
ENST00000513692 IRX4-003 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000558180 IRX3-002 retained_intron Homo_sapiens 0 265
ENST00000558597 IRX5-004 protein_coding Homo_sapiens 1e-38 165
ENST00000613726 IRX4-201 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000622814 IRX4-202 protein_coding Homo_sapiens 2.00386e-43 182

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