C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S11, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062226 Rps11-ps4-001 ENSMUSG00000046620 10090 + 12:51297487-51297960 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000062226
Transcript ID Brain Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000062226 0.050±0.03 0.103±0.00 0.166±0.06 0.084±0.06 0.281±0.00 0.117±0.00 0.016±0.00 0.116±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EN CIL_0005EN_0002 CGP 12:50341231-51376986
CIL_000826 CIL_000826_0002 VISTA 12:50701401-51303291
CIL_000893 CIL_000893_0002 VISTA 12:50974162-51576029
CIL_0007KV CIL_0007KV_0003 UCNEbase 12:51002016-51608860

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000075028 rps11-001 protein_coding Danio_rerio 0 329
ENSDART00000134524 rps11-002 processed_transcript Danio_rerio 0 324
ENST00000270625 RPS11-001 protein_coding Homo_sapiens 0 505
ENST00000594493 RPS11-003 protein_coding Homo_sapiens 0 486
ENST00000596873 RPS11-006 protein_coding Homo_sapiens 0 377
ENST00000599167 RPS11-004 retained_intron Homo_sapiens 0 278
ENST00000599561 RPS11-008 protein_coding Homo_sapiens 0 287
ENST00000600027 RPS11-005 retained_intron Homo_sapiens 0 278
ENST00000601216 RPS11-007 retained_intron Homo_sapiens 0 231
ENST00000601306 RPS11-009 nonsense_mediated_decay Homo_sapiens 0 484
ENST00000602252 RPS11-002 retained_intron Homo_sapiens 0 359

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