C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, alpha interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000109721 SNCAIP-201 ENSDARG00000075657 7955 + Zv9_NA89:13918-31536 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000109721
Transcript ID Brain Heart Liver Muscle
ENSDART00000109721 4.856±0.00 0.510±0.00 0.048±0.00 0.470±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0001 CGP Zv9_NA89:13918-87221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261367 SNCAIP-002 protein_coding Homo_sapiens 0 207
ENST00000261368 SNCAIP-001 protein_coding Homo_sapiens 0 207
ENST00000379538 SNCAIP-201 protein_coding Homo_sapiens 1e-35 156
ENST00000395466 SNCAIP-011 nonsense_mediated_decay Homo_sapiens 0 193
ENST00000395469 SNCAIP-009 nonsense_mediated_decay Homo_sapiens 6e-20 104
ENST00000414317 SNCAIP-202 protein_coding Homo_sapiens 6e-27 126
ENST00000504884 SNCAIP-203 protein_coding Homo_sapiens 0 193
ENST00000508017 SNCAIP-007 nonsense_mediated_decay Homo_sapiens 1e-35 156
ENST00000509023 SNCAIP-006 nonsense_mediated_decay Homo_sapiens 7e-27 126
ENST00000509154 SNCAIP-010 protein_coding Homo_sapiens 1e-35 156
ENST00000510658 SNCAIP-003 nonsense_mediated_decay Homo_sapiens 9e-27 126
ENST00000512146 SNCAIP-008 nonsense_mediated_decay Homo_sapiens 9e-36 156
ENST00000512385 SNCAIP-004 nonsense_mediated_decay Homo_sapiens 1e-35 156
ENST00000513719 SNCAIP-013 retained_intron Homo_sapiens 4e-20 104
ENST00000515215 SNCAIP-012 nonsense_mediated_decay Homo_sapiens 8e-36 156
ENST00000542191 SNCAIP-204 protein_coding Homo_sapiens 9e-36 156

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