C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, alpha interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379538 SNCAIP-201 ENSG00000064692 9606 + 5:122312125-122464099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000379538
Transcript ID Brain Testis
ENST00000379538 0.670±0.00 2.967±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0002 CGP 5:122311354-122830108

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0008021 TAS synaptic vesicle
GO:0008219 IEA cell death
GO:0031625 IPI ubiquitin protein ligase binding
GO:0042417 IDA dopamine metabolic process
GO:0042734 NAS presynaptic membrane
GO:0042802 IPI identical protein binding
GO:0043025 NAS neuronal cell body
GO:0046928 IDA regulation of neurotransmitter secretion
GO:0090083 IDA regulation of inclusion body assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178883 Sncaip-007 nonsense_mediated_decay Mus_musculus 0 2067
ENSMUST00000180259 Sncaip-009 nonsense_mediated_decay Mus_musculus 0 1871
ENSMUST00000025413 Sncaip-003 protein_coding Mus_musculus 0 1834
ENSMUST00000178678 Sncaip-001 protein_coding Mus_musculus 0 1834
ENSMUST00000178011 Sncaip-005 protein_coding Mus_musculus 0 1639
ENSMUST00000163742 Sncaip-004 protein_coding Mus_musculus 0 1639
ENSMUST00000115410 Sncaip-002 protein_coding Mus_musculus 0 1637
ENSMUST00000179625 Sncaip-011 protein_coding Mus_musculus 0 1635
ENSMUST00000177861 Sncaip-008 nonsense_mediated_decay Mus_musculus 0 1485
ENSMUST00000179689 Sncaip-010 protein_coding Mus_musculus 0 1478
ENSDART00000109721 SNCAIP-201 protein_coding Danio_rerio 1e-35 156
ENSMUST00000179038 Sncaip-012 protein_coding Mus_musculus 3e-22 111

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