C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, alpha interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261368 SNCAIP-001 ENSG00000064692 9606 + 5:122312069-122464219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverOvaryPlacentaTestisENST00000261368
Transcript ID Adrenal Brain Breast Colon Heart Liver Ovary Placenta Testis
ENST00000261368 2.098±0.00 0.184±0.00 0.366±0.10 0.565±0.00 0.187±0.00 0.304±0.00 5.692±6.64 0.866±0.37 1.841±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0002 CGP 5:122311354-122830108

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0008021 TAS synaptic vesicle
GO:0008219 IEA cell death
GO:0031625 IPI ubiquitin protein ligase binding
GO:0042417 IDA dopamine metabolic process
GO:0042734 NAS presynaptic membrane
GO:0042802 IPI identical protein binding
GO:0043025 NAS neuronal cell body
GO:0046928 IDA regulation of neurotransmitter secretion
GO:0090083 IDA regulation of inclusion body assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178011 Sncaip-005 protein_coding Mus_musculus 0 3092
ENSMUST00000163742 Sncaip-004 protein_coding Mus_musculus 0 3013
ENSMUST00000115410 Sncaip-002 protein_coding Mus_musculus 0 2994
ENSMUST00000025413 Sncaip-003 protein_coding Mus_musculus 0 2867
ENSMUST00000178678 Sncaip-001 protein_coding Mus_musculus 0 2867
ENSMUST00000180259 Sncaip-009 nonsense_mediated_decay Mus_musculus 0 1786
ENSMUST00000179625 Sncaip-011 protein_coding Mus_musculus 0 1644
ENSMUST00000178883 Sncaip-007 nonsense_mediated_decay Mus_musculus 0 1639
ENSMUST00000177861 Sncaip-008 nonsense_mediated_decay Mus_musculus 0 1633
ENSMUST00000179689 Sncaip-010 protein_coding Mus_musculus 0 1487
ENSDART00000109721 SNCAIP-201 protein_coding Danio_rerio 0 207
ENSMUST00000179038 Sncaip-012 protein_coding Mus_musculus 4e-22 111

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