C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, alpha interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000508017 SNCAIP-007 ENSG00000064692 9606 + 5:122312249-122464116 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyOvaryPlacentaENST00000508017
Transcript ID Adrenal Breast Heart Kidney Ovary Placenta
ENST00000508017 6.454±0.00 0.542±0.00 0.211±0.00 0.401±0.00 6.328±0.42 0.728±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0002 CGP 5:122311354-122830108

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180259 Sncaip-009 nonsense_mediated_decay Mus_musculus 0 2019
ENSMUST00000178883 Sncaip-007 nonsense_mediated_decay Mus_musculus 0 1871
ENSMUST00000178011 Sncaip-005 protein_coding Mus_musculus 0 1786
ENSMUST00000163742 Sncaip-004 protein_coding Mus_musculus 0 1786
ENSMUST00000115410 Sncaip-002 protein_coding Mus_musculus 0 1768
ENSMUST00000179625 Sncaip-011 protein_coding Mus_musculus 0 1644
ENSMUST00000025413 Sncaip-003 protein_coding Mus_musculus 0 1640
ENSMUST00000178678 Sncaip-001 protein_coding Mus_musculus 0 1640
ENSMUST00000177861 Sncaip-008 nonsense_mediated_decay Mus_musculus 0 1633
ENSMUST00000179689 Sncaip-010 protein_coding Mus_musculus 0 1487
ENSDART00000109721 SNCAIP-201 protein_coding Danio_rerio 1e-35 156
ENSMUST00000179038 Sncaip-012 protein_coding Mus_musculus 3e-22 111

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