C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synuclein, alpha interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000513719 SNCAIP-013 ENSG00000064692 9606 + 5:122444156-122464054 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyLungENST00000513719
Transcript ID Adrenal Colon Heart Kidney Lung
ENST00000513719 3.877±0.00 0.418±0.00 0.256±0.00 0.417±0.00 0.340±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0002 CGP 5:122311354-122830108

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180259 Sncaip-009 nonsense_mediated_decay Mus_musculus 0 1469
ENSMUST00000177861 Sncaip-008 nonsense_mediated_decay Mus_musculus 0 1469
ENSMUST00000178011 Sncaip-005 protein_coding Mus_musculus 0 1469
ENSMUST00000163742 Sncaip-004 protein_coding Mus_musculus 0 1469
ENSMUST00000115410 Sncaip-002 protein_coding Mus_musculus 0 1448
ENSMUST00000179689 Sncaip-010 protein_coding Mus_musculus 0 1328
ENSMUST00000179625 Sncaip-011 protein_coding Mus_musculus 0 1328
ENSMUST00000178883 Sncaip-007 nonsense_mediated_decay Mus_musculus 0 1321
ENSMUST00000025413 Sncaip-003 protein_coding Mus_musculus 0 1321
ENSMUST00000178678 Sncaip-001 protein_coding Mus_musculus 0 1321
ENSDART00000109721 SNCAIP-201 protein_coding Danio_rerio 4e-20 104

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