C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spalt-like transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616649 SALL3-201 ENSG00000256463 9606 + 18:78980275-78997397 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartTestisENST00000616649
Transcript ID Adrenal Brain Colon Heart Testis
ENST00000616649 0.029±0.00 0.636±0.00 0.030±0.00 0.064±0.00 0.287±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000018 CIL_000018_0002 CGP 18:77250549-79002677
CIL_0007MA CIL_0007MA_0003 UCNEbase 18:78027502-79284092
CIL_0007YX CIL_0007YX_0001 VISTA 18:78401276-79002723
CIL_0008XA CIL_0008XA_0001 VISTA 18:78421722-79023257
CIL_00094I CIL_00094I_0001 VISTA 18:78457730-79058836
CIL_0008KF CIL_0008KF_0001 VISTA 18:78942193-79542977
CIL_0008IX CIL_0008IX_0001 VISTA 18:78950009-79550795
CIL_000015 CIL_000015_0002 CGP 18:78980275-79378283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057950 Sall3-201 protein_coding Mus_musculus 0 2470
ENSMUST00000034090 Sall1-201 protein_coding Mus_musculus 0 291
ENSDART00000111842 sall1a-001 protein_coding Danio_rerio 0 246

Loading