C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spalt-like transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000537592 SALL3-001 ENSG00000256463 9606 + 18:78980275-78999974 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverPlacentaENST00000537592
Transcript ID Adrenal Brain Breast Kidney Liver Placenta
ENST00000537592 0.023±0.00 0.105±0.00 0.003±0.00 0.182±0.00 0.033±0.00 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000018 CIL_000018_0002 CGP 18:77250549-79002677
CIL_0007MA CIL_0007MA_0003 UCNEbase 18:78027502-79284092
CIL_0007YX CIL_0007YX_0001 VISTA 18:78401276-79002723
CIL_0008XA CIL_0008XA_0001 VISTA 18:78421722-79023257
CIL_00094I CIL_00094I_0001 VISTA 18:78457730-79058836
CIL_0008KF CIL_0008KF_0001 VISTA 18:78942193-79542977
CIL_0008IX CIL_0008IX_0001 VISTA 18:78950009-79550795
CIL_000015 CIL_000015_0002 CGP 18:78980275-79378283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0021891 IEA olfactory bulb interneuron development
GO:0035136 IEA forelimb morphogenesis
GO:0035137 IEA hindlimb morphogenesis
GO:0045879 IEA negative regulation of smoothened signaling pathway
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057950 Sall3-201 protein_coding Mus_musculus 0 1616
ENSMUST00000034090 Sall1-201 protein_coding Mus_musculus 0 291
ENSDART00000111842 sall1a-001 protein_coding Danio_rerio 0 246

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