C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000121981 smarce1-001 ENSDARG00000016871 7955 + 3:35071191-35080284 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000121981
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000121981 13.008±3.19 7.798±4.41 4.903±0.00 1.807±0.00 6.821±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103133 Smarce1-001 protein_coding Mus_musculus 0 649
ENSMUST00000135040 Smarce1-003 processed_transcript Mus_musculus 4e-31 139
ENST00000348513 SMARCE1-001 protein_coding Homo_sapiens 0 660
ENST00000431889 SMARCE1-012 protein_coding Homo_sapiens 0 636
ENST00000469334 SMARCE1-003 retained_intron Homo_sapiens 0 534
ENST00000474246 SMARCE1-006 protein_coding Homo_sapiens 1e-30 139
ENST00000478349 SMARCE1-018 protein_coding Homo_sapiens 0 636
ENST00000481231 SMARCE1-007 nonsense_mediated_decay Homo_sapiens 3e-31 139
ENST00000553649 SMARCE1P3-001 processed_pseudogene Homo_sapiens 0 420
ENST00000578112 SMARCE1-011 nonsense_mediated_decay Homo_sapiens 0 638
ENST00000580654 SMARCE1-016 protein_coding Homo_sapiens 0 398
ENST00000582955 SMARCE1-019 protein_coding Homo_sapiens 0 313

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