C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vinculin a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000124167 vcla-001 ENSDARG00000044968 7955 - 13:25435829-25508269 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENSDART00000124167
Transcript ID Kidney
ENSDART00000124167 1.795±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0007155 IEA cell adhesion
GO:0015629 IEA actin cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022369 Vcl-201 protein_coding Mus_musculus 0 414
ENSMUST00000122974 Ap3m1-008 processed_transcript Mus_musculus 2e-37 159
ENSMUST00000131469 Ap3m1-009 processed_transcript Mus_musculus 2e-37 159
ENSMUST00000154460 Ap3m1-001 protein_coding Mus_musculus 3e-36 159
ENST00000211998 VCL-201 protein_coding Homo_sapiens 0 1770
ENST00000372755 VCL-001 protein_coding Homo_sapiens 0 425
ENST00000436396 VCL-002 protein_coding Homo_sapiens 0 1243
ENST00000623461 VCL-007 processed_transcript Homo_sapiens 0 425

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